Home LiteratureArticle Details
PMID: 2537955 Published · ppublish English Journal Article

Cloning the BamHI restriction modification system.

Nucleic acids research ·Vol. 17 ·No. 3 ·1989-02-11 ·Pages 979-97

Brooks JE, Benner JS, Heiter DF, Silber KR, Sznyter LA, Jager-Quinton T, Moran LS, Slatko BE, Wilson GG, Nwankwo DO

Abstract

BamHI, a Type II restriction modification system from Bacillus amyloliquefaciensH recognizes the sequence GGATCC. The methylase and endonuclease genes have been cloned into E. coli in separate steps; the clone is able to restrict unmodified phage. Although within the clone the methylase and endonuclease genes are present on the same pACYC184 vector, the system can be maintained in E. coli only with an additional copy of the methylase gene present on a separate vector. The initial selection for BamHI methylase activity also yielded a second BamHI methylase gene which is not homologous in DNA sequence and hybridizes to different genomic restriction fragments than does the endonuclease-linked methylase gene. Finally, the interaction of the BamHI system with the E. coli Dam and the Mcr A and B functions, have been studied and are reported here.

MeSH Terms
Amino Acid Sequence Bacillus/enzymology,genetics Bacterial Proteins/genetics,isolation & purification Base Sequence Cloning, Molecular/methods DNA Modification Methylases/genetics DNA Probes/genetics,isolation & purification DNA Transposable Elements DNA, Bacterial/isolation & purification Deoxyribonuclease BamHI/genetics,isolation & purification,physiology Escherichia coli/genetics Gene Rearrangement Molecular Sequence Data Plasmids Restriction Mapping/methods Transformation, Genetic
Chemicals
Bacterial Proteins DNA Probes DNA Transposable Elements DNA, Bacterial DNA Modification Methylases Deoxyribonuclease BamHI
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Brooks J E
New England Biolabs, Beverly, MA 01915.
Benner J S
Heiter D F
Silber K R
Sznyter L A
Jager-Quinton T
Moran L S
Slatko B E
Wilson G G
Nwankwo D O
References (44)
44 references, click to expand
  1. Transposon mutagenesis and genetic mapping of the rglA and rglB loci of Escherichia coli.
    Mol Gen Genet. 1985;198(3):390-2 PMID: 2989655
  2. McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning.
    Nucleic Acids Res. 1988 Feb 25;16(4):1563-75 PMID: 2831502
  3. Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products.
    Nucleic Acids Res. 1985 Dec 9;13(23):8441-61 PMID: 3001639
  4. Dideoxy sequencing method using denatured plasmid templates.
    Anal Biochem. 1986 Feb 1;152(2):232-8 PMID: 3516005
  5. Cloning the DdeI restriction-modification system using a two-step method.
    Nucleic Acids Res. 1986 Oct 24;14(20):7939-51 PMID: 3022241
  6. Escherichia coli K-12 restricts DNA containing 5-methylcytosine.
    Proc Natl Acad Sci U S A. 1986 Dec;83(23):9070-4 PMID: 3024165
  7. Localization of a genetic region involved in McrB restriction by Escherichia coli K-12.
    J Bacteriol. 1987 Apr;169(4):1757-9 PMID: 3031021
  8. Supercoiled circular DNA-protein complex in Escherichia coli: purification and induced conversion to an opern circular DNA form.
    Proc Natl Acad Sci U S A. 1969 Apr;62(4):1159-66 PMID: 4894690
  9. Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA.
    Proc Natl Acad Sci U S A. 1972 Aug;69(8):2110-4 PMID: 4559594
  10. Isolation of a sequence-specific endonuclease (BamI) from Bacillus amyloliquefaciens H.
    J Mol Biol. 1975 Sep 5;97(1):123-5 PMID: 1177312
  11. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  12. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem. 1976 May 7;72:248-54 PMID: 942051
  13. The restriction endonucleases in Bacillus amyloliquefaciens N strain. Substrate specificities.
    Biochim Biophys Acta. 1976 Aug 18;442(2):184-96 PMID: 182257
  14. Recognition sequence of specific endonuclease BamH.I from Bacillus amyloliquefaciens H.
    Nature. 1977 Jan 6;265(5589):82-4 PMID: 834250
  15. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
  16. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  17. The use of thin acrylamide gels for DNA sequencing.
    FEBS Lett. 1978 Mar 1;87(1):107-10 PMID: 631324
  18. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  19. Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid.
    J Bacteriol. 1978 Jun;134(3):1141-56 PMID: 149110
  20. Sequence specificity of DNA methylases from Bacillus amyloliquefaciens and Bacillus brevis.
    J Mol Biol. 1978 Oct 5;124(4):701-11 PMID: 712853
  21. Purification and characterization of the sequence-specific endonuclease Bam HI.
    J Biol Chem. 1979 Feb 25;254(4):1003-6 PMID: 762109
  22. Sequence specificity of the P1 modification methylase (M.Eco P1) and the DNA methylase (M.Eco dam) controlled by the Escherichia coli dam gene.
    J Mol Biol. 1978 Dec 15;126(3):367-80 PMID: 370402
  23. The effect of differential methylation by Escherichia coli of plasmid DNA and phage T7 and lambda DNA on the cleavage by restriction endonuclease MboI from Moraxella bovis.
    Biochim Biophys Acta. 1979 May 24;562(3):418-28 PMID: 378259
  24. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  25. The use of synthetic oligonucleotides as hybridization probes. II. Hybridization of oligonucleotides of mixed sequence to rabbit beta-globin DNA.
    Nucleic Acids Res. 1981 Feb 25;9(4):879-94 PMID: 7232206
  26. Use of synthetic oligonucleotides as hybridization probes: isolation of cloned cDNA sequences for human beta 2-microglobulin.
    Proc Natl Acad Sci U S A. 1981 Nov;78(11):6613-7 PMID: 6171820
  27. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  28. Cloned restriction/modification system from Pseudomonas aeruginosa.
    Proc Natl Acad Sci U S A. 1983 Jan;80(2):402-6 PMID: 6300841
  29. Restriction and modification in Bacillus subtilis: DNA methylation potential of the related bacteriophages Z, SPR, SP beta, phi 3T, and rho 11.
    J Virol. 1983 May;46(2):446-53 PMID: 6302313
  30. Analysis of phenylthiohydantoins by ultrasensitive gradient high-performance liquid chromatography.
    Methods Enzymol. 1983;91:486-93 PMID: 6855596
  31. Computer programs for handling nucleic acid sequences.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):379-86 PMID: 6546422
  32. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  33. DNA methyltransferases of Bacillus subtilis and its bacteriophages.
    Curr Top Microbiol Immunol. 1984;108:11-22 PMID: 6325095
  34. Sequence-specific BamHI methylase. Purification and characterization.
    J Biol Chem. 1984 Aug 25;259(16):10357-62 PMID: 6469968
  35. Utility of the gas-phase sequencer for both liquid- and solid-phase degradation of proteins and peptides at low picomole levels.
    Anal Biochem. 1984 Aug 1;140(2):553-66 PMID: 6486440
  36. Uniformly spaced banding pattern in DNA sequencing gels by use of field-strength gradient.
    J Biochem Biophys Methods. 1984 Nov;10(1-2):83-90 PMID: 6520329
  37. Field gradients improve resolution on DNA sequencing gels.
    J Biochem Biophys Methods. 1984 Dec;10(3-4):237-43 PMID: 6530511
  38. Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.
    DNA. 1985 Apr;4(2):165-70 PMID: 3996185
  39. A novel strategy for constructing clustered point mutations.
    Nucleic Acids Res. 1985 Feb 11;13(3):1015-25 PMID: 2987803
  40. Cytosine-specific DNA modification interferes with plasmid establishment in Escherichia coli K12: involvement of rglB.
    Mol Gen Genet. 1986 Dec;205(3):469-75 PMID: 3550384
  41. Site-specific methylases induce the SOS DNA repair response in Escherichia coli.
    J Bacteriol. 1987 Jul;169(7):3243-50 PMID: 3036779
  42. Hemimethylation prevents DNA replication in E. coli.
    Cell. 1987 Sep 25;50(7):1071-9 PMID: 3304662
  43. Nucleotide sequence of the DdeI restriction-modification system and characterization of the methylase protein.
    Nucleic Acids Res. 1987 Oct 26;15(20):8249-66 PMID: 2823226
  44. Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli.
    J Bacteriol. 1985 Nov;164(2):501-9 PMID: 2997113
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1989-02-11
Pages
979-97
Language
English
Region
England
NLM ID
0411011
PMCID
PMC331717
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]