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PMID: 2983312 Published · ppublish English Journal Article

Molecular cloning and complete sequence determination of RNA genome of human rhinovirus type 14.

Callahan PL, Mizutani S, Colonno RJ

Abstract

The genomic RNA of human rhinovirus type 14 was cloned in Escherichia coli and the complete nucleotide sequence was determined. The RNA genome is 7212 nucleotides long. A single large open reading frame of 6536 nucleotides was identified, which starts at nucleotide 678 and ends 47 nucleotides from the 3' end of the RNA genome. Comparisons of the specified proteins with those of other picornaviruses showed a striking homology (44-65%) between rhinovirus and poliovirus. The rhinovirus genomic RNA is rich in adenosine (32.1%) and strongly favors an adenosine or uridine in the third position of codons. The predicted map locations of all the rhinovirus structural and non-structural proteins and their proposed proteolytic cleavage sites are described.

MeSH Terms
Amino Acid Sequence Base Sequence Chromosome Deletion Cloning, Molecular DNA/analysis Protein Biosynthesis RNA, Viral/analysis Rhinovirus/genetics Software
Chemicals
RNA, Viral DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Callahan P L
Mizutani S
Colonno R J
References (22)
22 references, click to expand
  1. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose.
    Proc Natl Acad Sci U S A. 1972 Jun;69(6):1408-12 PMID: 4504350
  2. Priming for and induction of anti-poliovirus neutralizing antibodies by synthetic peptides.
    Nature. 1983 Aug 25-31;304(5928):699-703 PMID: 6310403
  3. Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene.
    Proc Natl Acad Sci U S A. 1975 Oct;72(10):3961-5 PMID: 1105573
  4. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  5. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  6. Picornaviridae: second report.
    Intervirology. 1978;10(3):165-80 PMID: 210136
  7. Structure, translation, and replication of picornaviral genomes.
    Prog Med Virol. 1980;26:119-57 PMID: 6999533
  8. Taxonomy of viruses, 1980.
    Prog Med Virol. 1980;26:214-32 PMID: 6775348
  9. Chemical and electrophoretic properties of solubilizable disulfide gels.
    Anal Biochem. 1980 Jun;105(1):192-201 PMID: 7192506
  10. Primary structure, gene organization and polypeptide expression of poliovirus RNA.
    Nature. 1981 Jun 18;291(5816):547-53 PMID: 6264310
  11. A rapid boiling method for the preparation of bacterial plasmids.
    Anal Biochem. 1981 Jun;114(1):193-7 PMID: 6269464
  12. Molecular cloning of poliovirus cDNA and determination of the complete nucleotide sequence of the viral genome.
    Proc Natl Acad Sci U S A. 1981 Aug;78(8):4887-91 PMID: 6272282
  13. The complete nucleotide sequence of the RNA coding for the primary translation product of foot and mouth disease virus.
    Nucleic Acids Res. 1984 Mar 12;12(5):2461-72 PMID: 6324120
  14. The nucleotide and deduced amino acid sequences of the encephalomyocarditis viral polyprotein coding region.
    Nucleic Acids Res. 1984 Mar 26;12(6):2969-85 PMID: 6324136
  15. Complete nucleotide sequences of all three poliovirus serotype genomes. Implication for genetic relationship, gene function and antigenic determinants.
    J Mol Biol. 1984 Apr 25;174(4):561-85 PMID: 6202874
  16. Systematic nomenclature of picornavirus proteins.
    J Virol. 1984 Jun;50(3):957-9 PMID: 6726891
  17. Many rhinovirus serotypes share the same cellular receptor.
    J Virol. 1984 Aug;51(2):340-5 PMID: 6086949
  18. Similarity in gene organization and homology between proteins of animal picornaviruses and a plant comovirus suggest common ancestry of these virus families.
    Nucleic Acids Res. 1984 Sep 25;12(18):7251-67 PMID: 6384934
  19. Identification of a new neutralization antigenic site on poliovirus coat protein VP2.
    J Virol. 1984 Nov;52(2):719-21 PMID: 6208380
  20. Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes.
    Nucleic Acids Res. 1981 Oct 24;9(20):5233-52 PMID: 7301588
  21. A systemic DNA sequencing strategy.
    J Mol Biol. 1982 Jul 5;158(3):539-49 PMID: 6290669
  22. Rhinoviruses.
    Yale J Biol Med. 1975 Mar;48(1):17-45 PMID: 165644
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1985-02-00
Pages
732-6
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC397120
Subset
IM
Databases
GENBANK
K02121, X01087
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