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PMID: 6387394 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Undermodification in the first position of the anticodon of supG-tRNA reduces translational efficiency.

Molecular & general genetics : MGG ·Vol. 196 ·No. 2 ·1984-00-00 ·Pages 194-200

Hagervall TG, Björk GR

Abstract

Two mutants of Escherichia coli, trmC1 and trmC2, which are both defective in the synthesis of 5-methylaminomethyl-2-thiouridine (mnm5s2U) were utilized to study the function of this complex modified nucleoside. Transfer RNAs specific for glutamine, glutamic acid and lysine as well as a specific ochre suppressor derived from lysine tRNA (tRNAUAAlys encoded by the supG allele), contain this modified nucleoside at position 34 (the wobble position). It was found that two different undermodified derivatives of mnm5s2U were present in the two trmC mutants, which suggests that the two mutations affect two different enzymatic activities. Using the lacI-Z fusion system (Miller and Albertini 1983), we found that the efficiency of supG-mediated suppression was reduced to 30%-90% of the wild-type value in the trmC mutants. The modification-deficient supG-tRNA in the mutants showed a higher sensitivity to codon context than the normal tRNAUAAlys.

MeSH Terms
Anticodon Bacterial Proteins/genetics Escherichia coli/genetics Genes, Bacterial Genetic Complementation Test Methylation Plasmids Protein Biosynthesis RNA, Transfer/genetics Suppression, Genetic Thiouridine/analogs & derivatives,biosynthesis tRNA Methyltransferases/genetics
Chemicals
Anticodon Bacterial Proteins Thiouridine 5-methylaminomethyl-2-thiouridine RNA, Transfer tRNA Methyltransferases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Hagervall T G
Björk G R
References (40)
40 references, click to expand
  1. Isopentenyladenosine deficient tRNA from an antisuppressor mutant of Saccharomyces cerevisiae.
    Nucleic Acids Res. 1978 Nov;5(11):4329-42 PMID: 364426
  2. Glutamyl transfer ribonucleic acid synthetase of Escherichia coli. Effect of alteration of the 5-(methylaminomethyl)-2-thiouridine in the anticodon of glutamic acid transfer ribonucleic acid on the catalytic mechanism.
    Biochemistry. 1979 Dec 25;18(26):5819-26 PMID: 229902
  3. Adjacent effect on suppression efficiency. II. Study on ochre and amber mutants of T4 phage lysozyme.
    Mol Gen Genet. 1970;106(3):208-12 PMID: 5480467
  4. Model for regulation of the histidine operon of Salmonella.
    Proc Natl Acad Sci U S A. 1980 Jan;77(1):508-12 PMID: 6987654
  5. Genetic mapping and cloning of the gene (trmC) responsible for the synthesis of tRNA (mnm5s2U)methyltransferase in Escherichia coli K12.
    Mol Gen Genet. 1984;196(2):201-7 PMID: 6387395
  6. The influence of the reading context upon the suppression of nonsense codons.
    Mol Gen Genet. 1977 Mar 7;151(2):137-49 PMID: 327262
  7. Acetylornithinase of Escherichia coli: partial purification and some properties.
    J Biol Chem. 1956 Jan;218(1):97-106 PMID: 13278318
  8. Chemical measurement of steady-state levels of ten aminoacyl-transfer ribonucleic acid synthetases in Escherichia coli.
    J Bacteriol. 1977 Jan;129(1):378-87 PMID: 318645
  9. A convenient procedure for preparing transfer ribonucleic acid from Escherichia coli.
    Biochim Biophys Acta. 1969 Apr 22;179(2):297-307 PMID: 4890595
  10. Prolonged incubation in calcium chloride improves the competence of Escherichia coli cells.
    Gene. 1979 May;6(1):23-8 PMID: 383576
  11. The influence of the reading context upon the suppression of nonsense codons.
    Mol Gen Genet. 1969 Oct 13;105(2):125-30 PMID: 5367414
  12. An improved method for the separation and quantitation of the modified nucleosides of transfer RNA.
    Nucleic Acids Res. 1976 Jan;3(1):285-95 PMID: 1250705
  13. The influence of codon context on genetic code translation.
    Nature. 1980 Jul 10;286(5769):123-7 PMID: 7402305
  14. Pairing properties of the methylester of 5-carboxymethyl uridine in the wobble position of yeast tRNA3Arg.
    Biochim Biophys Acta. 1978 May 23;518(3):530-4 PMID: 350282
  15. The yeast tRNATyr gene intron is essential for correct modification of its tRNA product.
    Nature. 1983 Apr 21;302(5910):681-7 PMID: 6339954
  16. Biological function of 2-thiouridine in Escherichia coli glutamic acid transfer ribonucleic acid.
    Biochemistry. 1973 Oct 23;12(22):4331-7 PMID: 4584321
  17. Coding properties of an ochre-suppressing derivative of Escherichia coli tRNAITyr.
    J Mol Biol. 1977 May 25;112(3):453-70 PMID: 327078
  18. Isolation and characterization of context mutations affecting the suppressibility of nonsense mutations.
    Mol Gen Genet. 1980;177(4):615-27 PMID: 6991868
  19. Mutations affecting tRNATrp and its charging and their effect on regulation of transcription termination at the attenuator of the tryptophan operon.
    J Mol Biol. 1977 Jul 15;113(4):663-77 PMID: 330867
  20. Context effects: translation of UAG codon by suppressor tRNA is affected by the sequence following UAG in the message.
    J Mol Biol. 1983 Feb 15;164(1):73-87 PMID: 6188841
  21. Yeast ochre suppressor SUQ5-ol is an altered tRNA Ser UCA.
    Nucleic Acids Res. 1981 Jul 10;9(13):3077-88 PMID: 7024909
  22. Presumed anticodon structure of glutamic acid tRNA from E. coli: a possible location of a 2-thiouridine derivative in the first position of the anticodon.
    Biochem Biophys Res Commun. 1970 Aug 24;40(4):866-72 PMID: 4924671
  23. Effect of neighboring nucleotide sequences on suppression efficiency in amber mutants of T4 phage lysozyme.
    Mol Gen Genet. 1976 Nov 24;149(1):1-4 PMID: 1012265
  24. The antisuppressor strain sin1 of Schizosaccharomyces pombe lacks the modification isopentenyladenosine in transfer RNA.
    J Mol Biol. 1980 May 15;139(2):207-19 PMID: 7411631
  25. The influence of the reading context upon the suppression of nonsense codons. 3.
    Cold Spring Harb Symp Quant Biol. 1969;34:513-20 PMID: 5266175
  26. A functional requirement for modification of the wobble nucleotide in tha anticodon of a T4 suppressor tRNA.
    Cell. 1976 Nov;9(3):449-63 PMID: 791507
  27. Specificity of yeast glutamic acid transfer RNA for codon recognition.
    Biochim Biophys Acta. 1969 Jun 17;182(2):411-26 PMID: 4894016
  28. Genetic studies of the lac repressor. I. Correlation of mutational sites with specific amino acid residues: construction of a colinear gene-protein map.
    J Mol Biol. 1977 Jan 15;109(2):275-98 PMID: 839542
  29. Regulation of aromatic amino acid transport by tRNA: role of 2-methylthio-N6-(delta2-isopentenyl)-adenosine.
    Nucleic Acids Res. 1981 Jan 24;9(2):401-14 PMID: 7010315
  30. Lac repressor can be fused to beta-galactosidase.
    Nature. 1974 Jun 7;249(457):561-3 PMID: 4599764
  31. Restriction or amplification of wobble recognition: the structure of 2-thio-5-methylaminomethyluridine and the interaction of odd uridines with the anticodon loop backbone.
    FEBS Lett. 1978 Oct 15;94(2):361-4 PMID: 700157
  32. Compilation of tRNA sequences.
    Nucleic Acids Res. 1983 Jan 11;11(1):r1-53 PMID: 6866759
  33. Uridine-33 in yeast tRNA not essential for amber suppression.
    Nature. 1983 Oct 6-12;305(5934):554-6 PMID: 6353248
  34. Escherichia coli mutants with defects in the biosynthesis of 5-methylaminomethyl-2-thio-uridine or 1-methylguanosine in their tRNA.
    J Bacteriol. 1978 Feb;133(2):508-17 PMID: 342495
  35. Culture medium for enterobacteria.
    J Bacteriol. 1974 Sep;119(3):736-47 PMID: 4604283
  36. The role of 2-methylthio-N6-isopentenyladenosine in readthrough and suppression of nonsense codons in Escherichia coli.
    Mol Gen Genet. 1983;190(2):289-94 PMID: 6410151
  37. Isolation and partial characterization of three Escherichia coli mutants with altered transfer ribonucleic acid methylases.
    J Bacteriol. 1975 Apr;122(1):257-65 PMID: 1091626
  38. supG and supL in Escherichia coli code for mutant lysine tRNAs+.
    Nucleic Acids Res. 1983 Dec 10;11(23):8283-6 PMID: 6369245
  39. Effects of surrounding sequence on the suppression of nonsense codons.
    J Mol Biol. 1983 Feb 15;164(1):59-71 PMID: 6188840
  40. Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli.
    J Bacteriol. 1951 Sep;62(3):293-300 PMID: 14888646
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1984-00-00
Pages
194-200
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
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