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PMID: 8002608 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

The leucine-responsive regulatory protein of Escherichia coli negatively regulates transcription of ompC and micF and positively regulates translation of ompF.

Journal of bacteriology ·Vol. 177 ·No. 1 ·1995-01-00 ·Pages 103-13

Ferrario M, Ernsting BR, Borst DW, Wiese DE, Blumenthal RM, Matthews RG

Abstract

The two major porins of Escherichia coli K-12 strains, OmpC and OmpF, are inversely regulated with respect to one another. The expression of OmpC and OmpF has been shown to be influenced by the leucine-responsive regulatory protein (Lrp): two-dimensional gel electrophoresis of proteins from strains with and strains without a functional Lrp protein revealed that OmpC expression is increased in an lrp strain, while OmpF expression is decreased. In agreement with these findings, we now present evidence that transcriptional (operon) fusions of lacZ+ to ompC and micF are negatively regulated by Lrp. Lrp binds specifically to the intergenic region between micF and ompC, as indicated by mobility shift assays and by DNase I footprinting. The expression of an ompF'-lacZ+ gene (translational) fusion is increased 3.7-fold in an lrp+ background compared with an lrp background, but expression of an ompF-lacZ+ operon fusion is not. Studies of in vivo expression of the outer membrane porins during growth on glucose minimal medium showed that the OmpF/OmpC ratio is higher in lrp+ strains than it is in isogenic lrp strains. The effect of Lrp was not seen in a strain containing a deletion of micF. Our studies suggest that the positive effect of Lrp on OmpF expression stems from a negative effect of Lrp on the expression of micF, an antisense RNA that inhibits ompF translation.

Related Genes
MeSH Terms
Bacterial Outer Membrane Proteins/biosynthesis,genetics Bacterial Proteins/metabolism Base Sequence DNA, Bacterial/metabolism DNA-Binding Proteins/metabolism Escherichia coli/genetics Escherichia coli Proteins Gene Expression Regulation, Bacterial Leucine-Responsive Regulatory Protein Molecular Sequence Data Osmotic Pressure Plasmids/genetics Porins/biosynthesis Protein Binding Protein Biosynthesis Recombinant Fusion Proteins/biosynthesis Regulatory Sequences, Nucleic Acid/genetics Transcription Factors Transcription, Genetic beta-Galactosidase/biosynthesis,genetics
Chemicals
Bacterial Outer Membrane Proteins Bacterial Proteins DNA, Bacterial DNA-Binding Proteins Escherichia coli Proteins Lrp protein, E coli Porins Recombinant Fusion Proteins Transcription Factors Leucine-Responsive Regulatory Protein beta-Galactosidase
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Ferrario M
Department of Biological Chemistry, University of Michigan, Ann Arbor 48109-1055.
Ernsting B R
Borst D W
Wiese D E
Blumenthal R M
Matthews R G
References (51)
51 references, click to expand
  1. Identification of the DNA-binding domain of the OmpR protein required for transcriptional activation of the ompF and ompC genes of Escherichia coli by in vivo DNA footprinting.
    J Biol Chem. 1989 Jun 15;264(17):10104-9 PMID: 2656704
  2. A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.
    Microbiol Rev. 1989 Mar;53(1):1-24 PMID: 2540407
  3. Signal transduction in bacteria.
    Nature. 1990 Mar 29;344(6265):395-400 PMID: 2157156
  4. In vivo phosphorylation of OmpR, the transcription activator of the ompF and ompC genes in Escherichia coli.
    J Bacteriol. 1990 Jun;172(6):3473-7 PMID: 2160945
  5. micF RNA in ompB mutants of Escherichia coli: different pathways regulate micF RNA levels in response to osmolarity and temperature change.
    J Bacteriol. 1990 Aug;172(8):4143-50 PMID: 1695892
  6. The leucine regulon of Escherichia coli K-12: a mutation in rblA alters expression of L-leucine-dependent metabolic operons.
    J Bacteriol. 1990 Aug;172(8):4529-35 PMID: 2165479
  7. The ilvIH operon of Escherichia coli is positively regulated.
    J Bacteriol. 1990 Aug;172(8):4563-70 PMID: 2115869
  8. Integration host factor is a negative effector of in vivo and in vitro expression of ompC in Escherichia coli.
    J Bacteriol. 1990 Sep;172(9):5293-8 PMID: 2203749
  9. Signal transduction in bacteria: kinases that control gene expression.
    New Biol. 1990 Jan;2(1):5-9 PMID: 1964084
  10. Characterization of Lrp, and Escherichia coli regulatory protein that mediates a global response to leucine.
    J Biol Chem. 1991 Jun 15;266(17):10768-74 PMID: 2040596
  11. cis-acting ompF mutations that result in OmpR-dependent constitutive expression.
    J Bacteriol. 1991 Jul;173(13):4039-48 PMID: 1648075
  12. The leucine-Lrp regulon in E. coli: a global response in search of a raison d'être.
    Cell. 1992 Feb 21;68(4):617-9 PMID: 1739970
  13. Characterization of the regulon controlled by the leucine-responsive regulatory protein in Escherichia coli.
    J Bacteriol. 1992 Feb;174(4):1109-18 PMID: 1346534
  14. Expression of micF involved in porin synthesis in Escherichia coli: two distinct cis-acting elements respectively regulate micF expression positively and negatively.
    FEMS Microbiol Lett. 1991 Sep 15;67(1):39-44 PMID: 1723390
  15. Lambda placMu insertions in genes of the leucine regulon: extension of the regulon to genes not regulated by leucine.
    J Bacteriol. 1992 Mar;174(6):1948-55 PMID: 1532173
  16. The lrp gene product regulates expression of lysU in Escherichia coli K-12.
    J Bacteriol. 1992 May;174(9):2779-84 PMID: 1569010
  17. Lrp, a global regulatory protein of Escherichia coli, binds co-operatively to multiple sites and activates transcription of ilvIH.
    J Mol Biol. 1993 Jan 20;229(2):306-18 PMID: 8429549
  18. Posttranscriptional repression of Escherichia coli OmpF protein in response to redox stress: positive control of the micF antisense RNA by the soxRS locus.
    J Bacteriol. 1993 Feb;175(4):1026-31 PMID: 7679383
  19. Regulation of pyelonephritis-associated pili phase-variation in Escherichia coli: binding of the PapI and the Lrp regulatory proteins is controlled by DNA methylation.
    Mol Microbiol. 1993 Feb;7(4):545-53 PMID: 8096319
  20. Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure.
    EMBO J. 1993 Jun;12(6):2495-501 PMID: 8508774
  21. Regulation of the gltBDF operon of Escherichia coli: how is a leucine-insensitive operon regulated by the leucine-responsive regulatory protein?
    J Bacteriol. 1993 Nov;175(22):7160-9 PMID: 7901196
  22. Regulation of the Escherichia coli lrp gene.
    J Bacteriol. 1994 Apr;176(7):1831-9 PMID: 8144448
  23. The OmpR protein of Escherichia coli binds to sites in the ompF promoter region in a hierarchical manner determined by its degree of phosphorylation.
    J Biol Chem. 1994 Apr 29;269(17):12559-66 PMID: 8175665
  24. Structure-function relationship of the Lrp-binding region upstream of lysU in Escherichia coli.
    J Mol Biol. 1994 Aug 19;241(3):378-89 PMID: 8064854
  25. In vivo footprinting analysis of Lrp binding to the ilvIH promoter region of Escherichia coli.
    J Bacteriol. 1994 Sep;176(17):5197-201 PMID: 8071194
  26. Interaction of a redox-sensitive DNA-binding factor with the 5'-flanking region of the micF gene in Escherichia coli.
    Mol Microbiol. 1993 Nov;10(4):877-84 PMID: 7934849
  27. The regulatory RNA gene micF is present in several species of gram-negative bacteria and is phylogenetically conserved.
    Mol Microbiol. 1994 May;12(4):639-46 PMID: 7523827
  28. The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli.
    Microbiol Rev. 1994 Sep;58(3):466-90 PMID: 7968922
  29. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  30. Culture medium for enterobacteria.
    J Bacteriol. 1974 Sep;119(3):736-47 PMID: 4604283
  31. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu.
    J Mol Biol. 1976 Jul 5;104(3):541-55 PMID: 781293
  32. Influence of cultural conditions and mutations on the composition of the outer membrane proteins of Escherichia coli.
    Mol Gen Genet. 1976 Sep 23;147(3):251-62 PMID: 787762
  33. Role of transport systems in amino acid metabolism: leucine toxicity and the branched-chain amino acid transport systems.
    J Bacteriol. 1977 Mar;129(3):1257-65 PMID: 321421
  34. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  35. Separation and characterization of the outer membrane of Pseudomonas aeruginosa.
    J Biochem. 1978 Jul;84(1):179-91 PMID: 99443
  36. Transcriptional regulation of Escherichia coli K-12 major outer membrane protein 1b.
    J Bacteriol. 1979 Nov;140(2):342-50 PMID: 115844
  37. Influence of molecular size and osmolarity of sugars and dextrans on the synthesis of outer membrane proteins O-8 and O-9 of Escherichia coli K-12.
    J Bacteriol. 1979 Dec;140(3):843-7 PMID: 391802
  38. The ompB locus and the regulation of the major outer membrane porin proteins of Escherichia coli K12.
    J Mol Biol. 1981 Feb 15;146(1):23-43 PMID: 7021856
  39. Porin channels in Escherichia coli: studies with liposomes reconstituted from purified proteins.
    J Bacteriol. 1983 Jan;153(1):241-52 PMID: 6294049
  40. A comparative study on the genes for three porins of the Escherichia coli outer membrane. DNA sequence of the osmoregulated ompC gene.
    J Biol Chem. 1983 Jun 10;258(11):6932-40 PMID: 6304064
  41. A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA).
    Proc Natl Acad Sci U S A. 1984 Apr;81(7):1966-70 PMID: 6201848
  42. Construction and characterization of a deletion mutant lacking micF, a proposed regulatory gene for OmpF synthesis in Escherichia coli.
    J Bacteriol. 1985 Jun;162(3):1196-202 PMID: 3888961
  43. Uncoupling of osmoregulation of the Escherichia coli K-12 ompF gene from ompB-dependent transcription.
    J Bacteriol. 1985 Jul;163(1):82-7 PMID: 2989255
  44. Purification and characterization of the OmpR protein, a positive regulator involved in osmoregulatory expression of the ompF and ompC genes in Escherichia coli.
    J Biol Chem. 1986 Nov 15;261(32):15252-6 PMID: 3533941
  45. Interaction of a transcriptional activator, OmpR, with reciprocally osmoregulated genes, ompF and ompC, of Escherichia coli.
    J Biol Chem. 1986 Dec 25;261(36):17113-9 PMID: 3023382
  46. The isolation and characterization of RNA coded by the micF gene in Escherichia coli.
    Nucleic Acids Res. 1987 Mar 11;15(5):2089-101 PMID: 2436145
  47. Function of micF as an antisense RNA in osmoregulatory expression of the ompF gene in Escherichia coli.
    J Bacteriol. 1987 Jul;169(7):3007-12 PMID: 2439487
  48. Environmentally regulated gene expression for membrane proteins in Escherichia coli.
    Annu Rev Cell Biol. 1988;4:21-42 PMID: 2848552
  49. A protein that binds to the regulatory region of the Escherichia coli ilvIH operon.
    J Bacteriol. 1989 Mar;171(3):1658-64 PMID: 2646291
  50. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution.
    Proc Natl Acad Sci U S A. 1989 Apr;86(7):2172-5 PMID: 2648393
  51. The function of micF RNA. micF RNA is a major factor in the thermal regulation of OmpF protein in Escherichia coli.
    J Biol Chem. 1989 Oct 25;264(30):17961-70 PMID: 2478539
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1995-01-00
Pages
103-13
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC176562
Subset
IM
Grants
NIGMS NIH HHS · 2-T32-GM07315 · United States
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