Home LiteratureArticle Details
PMID: 8385667 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

bchFNBH bacteriochlorophyll synthesis genes of Rhodobacter capsulatus and identification of the third subunit of light-independent protochlorophyllide reductase in bacteria and plants.

Journal of bacteriology ·Vol. 175 ·No. 8 ·1993-04-00 ·Pages 2414-22

Burke DH, Alberti M, Hearst JE

Abstract

We present the nucleotide and deduced amino acid sequences of four contiguous bacteriochlorophyll synthesis genes from Rhodobacter capsulatus. Three of these genes code for enzymes which catalyze reactions common to the chlorophyll synthesis pathway and therefore are likely to be found in plants and cyanobacteria as well. The pigments accumulated in strains with physically mapped transposon insertion mutations are analyzed by absorbance and fluorescence spectroscopy, allowing us to assign the genes as bchF, bchN, bchB, and bchH, in that order. bchF encodes a bacteriochlorophyll alpha-specific enzyme that adds water across the 2-vinyl group. The other three genes are required for portions of the pathway that are shared with chlorophyll synthesis, and they were expected to be common to both pathways. bchN and bchB are required for protochlorophyllide reduction in the dark (along with bchL), a reaction that has been observed in all major groups of photosynthetic organisms except angiosperms, where only the light-dependent reaction has been clearly established. The purple bacterial and plant enzymes show 35% identity between the amino acids coded by bchN and chlN (gidA) and 49% identity between the amino acids coded by bchL and chlL (frxC). Furthermore, bchB is 33% identical to ORF513 from the Marchantia polymorpha chloroplast. We present arguments in favor of the probable role of ORF513 (chlB) in protochlorophyllide reduction in the dark. The further similarities of all three subunits of protochlorophyllide reductase and the three subunits of chlorin reductase in bacteriochlorophyll synthesis suggest that the two reductase systems are derived from a common ancestor.

MeSH Terms
Amino Acid Sequence Bacterial Proteins/chemistry Bacteriochlorophylls/biosynthesis Base Sequence Biological Evolution Chromosome Mapping DNA Transposable Elements Genes, Bacterial Light Molecular Sequence Data Mutation Open Reading Frames Operon Oxidoreductases/chemistry Oxidoreductases Acting on CH-CH Group Donors Plants/enzymology Rhodobacter capsulatus/enzymology,genetics
Chemicals
Bacterial Proteins Bacteriochlorophylls DNA Transposable Elements bacteriochlorophyll A proteins, Bacteria Oxidoreductases Oxidoreductases Acting on CH-CH Group Donors protochlorophyllide reductase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Burke D H
Department of Chemistry, University of California, Berkeley.
Alberti M
Hearst J E
References (29)
29 references, click to expand
  1. Mobilization of the genes for photosynthesis from Rhodopseudomonas capsulata by a promiscuous plasmid.
    J Bacteriol. 1981 Jun;146(3):1003-12 PMID: 6787008
  2. Growth of a photosynthetic bacterium anaerobically in darkness, supported by "oxidant-dependent" sugar fermentation.
    Arch Microbiol. 1978 May 30;117(2):119-22 PMID: 678017
  3. Transcriptional regulation of several genes for bacteriochlorophyll biosynthesis in Rhodopseudomonas capsulata in response to oxygen.
    J Bacteriol. 1983 Nov;156(2):686-94 PMID: 6415036
  4. Characterization of Rhodopseudomonas capsulata.
    Arch Microbiol. 1975 Nov 7;105(3):207-16 PMID: 1103769
  5. Genetic-physical mapping of a photosynthetic gene cluster from R. capsulata.
    Cell. 1984 Jul;37(3):937-47 PMID: 6086150
  6. The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals.
    Mol Gen Genet. 1989 Jun;217(2-3):185-94 PMID: 2770692
  7. Magnesium protoporphyrin chelatase activity in Rhodopseudomonas spheroides. Studies with whole cells.
    Biochem J. 1972 Mar;127(1):97-106 PMID: 4627449
  8. Alignment of genetic and restriction maps of the photosynthesis region of the Rhodopseudomonas capsulata chromosome by a conjugation-mediated marker rescue technique.
    J Bacteriol. 1983 May;154(2):580-90 PMID: 6302077
  9. FseI, a new type II restriction endonuclease that recognizes the octanucleotide sequence 5' GGCCGGCC 3'.
    Nucleic Acids Res. 1990 Apr 25;18(8):2061-4 PMID: 2159636
  10. Nucleotide and deduced polypeptide sequences of the photosynthetic reaction-center, B870 antenna, and flanking polypeptides from R. capsulata.
    Cell. 1984 Jul;37(3):949-57 PMID: 6744416
  11. Analysis of the promoter and regulatory sequences of an oxygen-regulated bch operon in Rhodobacter capsulatus by site-directed mutagenesis.
    J Bacteriol. 1993 Apr;175(7):2037-45 PMID: 8458846
  12. Improved sensitivity of biological sequence database searches.
    Comput Appl Biosci. 1990 Jul;6(3):237-45 PMID: 2207748
  13. Growth of Rhodopseudomonas capsulata under anaerobic dark conditions with dimethyl sulfoxide.
    Arch Biochem Biophys. 1977 Jun;181(2):411-8 PMID: 900930
  14. A possible alternate pathway of bacteriochlorophyll biosynthesis in a mutant of Rhodopseudomonas sphaeroides.
    Biochemistry. 1975 Jul 15;14(14):3132-7 PMID: 1080053
  15. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  16. The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.
    EMBO J. 1986 Sep;5(9):2043-2049 PMID: 16453699
  17. Chloroplast biogenesis. Detection of divinyl protochlorophyllide in higher plants.
    J Biol Chem. 1980 Feb 25;255(4):1266-72 PMID: 7354026
  18. Control of magnesium-protoporphyrin chelatase activity in Rhodopseudomonas spheroides. Role of light, oxygen, and electron and energy transfer.
    Biochem J. 1973 Aug;134(4):833-45 PMID: 4202754
  19. Rhodobacter capsulatus genes involved in early steps of the bacteriochlorophyll biosynthetic pathway.
    J Bacteriol. 1990 Sep;172(9):5001-10 PMID: 2203738
  20. Kinetic studies of pigment synthesis by non-sulfur purple bacteria.
    J Cell Physiol. 1957 Feb;49(1):25-68 PMID: 13416343
  21. Light-independent chlorophyll biosynthesis: involvement of the chloroplast gene chlL (frxC).
    Plant Cell. 1992 Aug;4(8):929-40 PMID: 1392602
  22. Cloning and nucleotide sequence of a frxC-ORF469 gene cluster of Synechocystis PCC6803: conservation with liverwort chloroplast frxC-ORF465 and nif operon.
    Biosci Biotechnol Biochem. 1992 May;56(5):788-93 PMID: 1368342
  23. Nucleotide sequence, organization, and nature of the protein products of the carotenoid biosynthesis gene cluster of Rhodobacter capsulatus.
    Mol Gen Genet. 1989 Apr;216(2-3):254-68 PMID: 2747617
  24. Homologues of the green algal gidA gene and the liverwort frxC gene are present on the chloroplast genomes of conifers.
    Plant Mol Biol. 1991 Oct;17(4):787-98 PMID: 1912499
  25. The superoperonal organization of genes for pigment biosynthesis and reaction center proteins is a conserved feature in Rhodobacter capsulatus: analysis of overlapping bchB and puhA transcripts.
    Mol Gen Genet. 1991 Sep;228(3):433-44 PMID: 1896013
  26. A chloroplast gene is required for the light-independent accumulation of chlorophyll in Chlamydomonas reinhardtii.
    EMBO J. 1992 May;11(5):1697-704 PMID: 1374710
  27. Functional Organization of the Chlorophyll-Containing Complexes of Chlamydomonas reinhardi: A Study of Their Formation and Interconnection with Reaction Centers in the Greening Process of the y-1 Mutant.
    Plant Physiol. 1982 Sep;70(3):637-44 PMID: 16662548
  28. Map of genes for carotenoid and bacteriochlorophyll biosynthesis in Rhodopseudomonas capsulata.
    J Bacteriol. 1976 May;126(2):619-29 PMID: 1262313
  29. Localized transposon Tn5 mutagenesis of the photosynthetic gene cluster of Rhodobacter sphaeroides.
    Mol Microbiol. 1990 Jun;4(6):977-89 PMID: 2170816
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1993-04-00
Pages
2414-22
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC204531
Subset
IM
Grants
NIGMS NIH HHS · GM 30786 · United States
Databases
GENBANK
Z11165
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]