Home LiteratureArticle Details
PMID: 8892837 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UBVA2C) of Burkholderia pickettii PKO1: role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT.

Journal of bacteriology ·Vol. 178 ·No. 21 ·1996-11-00 ·Pages 6327-37

Byrne AM, Olsen RH

Abstract

Burkholderia pickettii PKO1 metabolizes toluene and benzene via a chromosomally encoded toluene-3-monooxygenase pathway. Expression of the toluene-3-monooxygenase operon (tbuA1UBVA2C) is activated by the regulator, TbuT, in the presence of toluene. We have identified the TbuT coding region downstream of the toluene-3-monooxygenase structural genes by nucleotide sequence analysis and have shown that although TbuT is similar to XylR and DmpR, two members of the NtrC family of transcriptional activators which control toluene-xylene and (methyl)phenol catabolism, respectively, it is significantly different in the domain associated with effector specificity. Using a tbuA1-lacZ fusion reporter system, we determined that TbuT is activated not only by aromatic effectors but also the chlorinated aliphatic hydrocarbon trichloroethylene. Expression of tbuT and that of the tbuA1UBVA2C operon were found to be linked by readthrough transcription of tbuT from the toluene-3-monooxygenase promoter. As a result, transcription of tbuT is low when the toluene-3-monooxygenase operon is uninduced and high when expression of tbuA1UBVA2C is induced by toluene. Thus, the toluene-3-monooxygenase promoter drives the cascade expression of both the toluene-3-monooxygenase operon and tbuT, resulting in a positive feedback circuit. Examination of the nucleotide sequence upstream of the toluene-3-monooxygenase operon for promoter-like sequences revealed a -24 TGGC, -12 TTGC sequence, characteristic of sigma54 (rpoN)-dependent promoters. Primer extension and tbuA1-lacZ fusion analyses demonstrated that this -24, -12 promoter sequence, referred to as PtbuA1, was the toluene-3-monooxygenase promoter. Upstream of PtbuA1, a DNA region with dyad symmetry exhibited homology with the XylR-binding site present upstream of the Pu promoter. Deletions within this DNA sequence resulted in complete loss of expression from PtbuA1, suggesting that this region may serve as the TbuT-binding site.

MeSH Terms
Amino Acid Sequence Bacterial Proteins Base Sequence Burkholderia/enzymology DNA, Bacterial DNA-Binding Proteins/chemistry Gene Expression Regulation, Bacterial Molecular Sequence Data Operon Oxygenases/genetics PII Nitrogen Regulatory Proteins Promoter Regions, Genetic RNA, Messenger Regulatory Sequences, Nucleic Acid Sequence Deletion Trans-Activators/genetics Transcription Factors
Chemicals
Bacterial Proteins DNA, Bacterial DNA-Binding Proteins PII Nitrogen Regulatory Proteins RNA, Messenger Trans-Activators Transcription Factors Oxygenases toluene-3-monooxygenase
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Byrne A M
Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor 48109-0620, USA.
Olsen R H
References (47)
47 references, click to expand
  1. Purification and characterization of toluene 2-monooxygenase from Burkholderia cepacia G4.
    Biochemistry. 1995 Oct 31;34(43):14066-76 PMID: 7578004
  2. Nucleotide sequence analysis of genes encoding a toluene/benzene-2-monooxygenase from Pseudomonas sp. strain JS150.
    Appl Environ Microbiol. 1995 Sep;61(9):3336-46 PMID: 7574644
  3. Signal sensing by sigma 54-dependent regulators: derepression as a control mechanism.
    Mol Microbiol. 1996 Feb;19(3):409-16 PMID: 8830233
  4. Growth phase-dependent transcription of the sigma(54)-dependent Po promoter controlling the Pseudomonas-derived (methyl)phenol dmp operon of pVI150.
    J Bacteriol. 1996 Jul;178(13):3727-35 PMID: 8682773
  5. Comparison of factors influencing trichloroethylene degradation by toluene-oxidizing bacteria.
    Appl Environ Microbiol. 1996 Mar;62(3):825-33 PMID: 8975612
  6. Acetylornithinase of Escherichia coli: partial purification and some properties.
    J Biol Chem. 1956 Jan;218(1):97-106 PMID: 13278318
  7. Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid.
    J Bacteriol. 1975 Oct;124(1):7-13 PMID: 1176436
  8. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  9. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans.
    Proc Natl Acad Sci U S A. 1979 Apr;76(4):1648-52 PMID: 377280
  10. Development of broad-host-range vectors and gene banks: self-cloning of the Pseudomonas aeruginosa PAO chromosome.
    J Bacteriol. 1982 Apr;150(1):60-9 PMID: 6277872
  11. Precise location of two promoters for the beta-lactamase gene of pBR322. S1 mapping of ribonucleic acid isolated from Escherichia coli or synthesized in vitro.
    J Biol Chem. 1982 Aug 10;257(15):9205-10 PMID: 6178738
  12. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  13. 3-A resolution structure of a protein with histone-like properties in prokaryotes.
    Nature. 1984 Aug 2-8;310(5976):376-81 PMID: 6540370
  14. Identification and regulation of the glnL operator-promoter of the complex glnALG operon of Escherichia coli.
    J Bacteriol. 1984 Oct;160(1):379-84 PMID: 6148334
  15. E. coli integration host factor binds to specific sites in DNA.
    Cell. 1984 Dec;39(3 Pt 2):707-16 PMID: 6096022
  16. Sequence and domain relationships of ntrC and nifA from Klebsiella pneumoniae: homologies to other regulatory proteins.
    EMBO J. 1986 Feb;5(2):441-7 PMID: 3011408
  17. Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product.
    Proc Natl Acad Sci U S A. 1987 Aug;84(15):5182-6 PMID: 2440045
  18. Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida.
    Gene. 1988 Jun 30;66(2):301-6 PMID: 3169574
  19. Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway.
    J Bacteriol. 1989 Dec;171(12):6782-90 PMID: 2687253
  20. Protein phosphorylation and regulation of adaptive responses in bacteria.
    Microbiol Rev. 1989 Dec;53(4):450-90 PMID: 2556636
  21. Transformation of Pseudomonas aeruginosa by electroporation.
    Nucleic Acids Res. 1989 Dec 25;17(24):10509 PMID: 2513561
  22. Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid.
    J Mol Biol. 1990 Nov 20;216(2):251-60 PMID: 2174974
  23. An upstream XylR- and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmid.
    EMBO J. 1991 May;10(5):1159-67 PMID: 2022186
  24. Genetic organization and regulation of a meta cleavage pathway for catechols produced from catabolism of toluene, benzene, phenol, and cresols by Pseudomonas pickettii PKO1.
    J Bacteriol. 1991 Aug;173(15):4587-94 PMID: 1856161
  25. Functional analysis of the Pseudomonas putida regulatory protein CatR: transcriptional studies and determination of the CatR DNA-binding site by hydroxyl-radical footprinting.
    J Bacteriol. 1991 Aug;173(15):4717-24 PMID: 1649820
  26. Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for integration host factor protein.
    J Biol Chem. 1991 Aug 25;266(24):15832-8 PMID: 1874736
  27. Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase.
    J Bacteriol. 1991 Sep;173(17):5315-27 PMID: 1885512
  28. Prokaryotic transcriptional enhancers and enhancer-binding proteins.
    Trends Biochem Sci. 1991 Nov;16(11):397-402 PMID: 1776167
  29. The products of the kdpDE operon are required for expression of the Kdp ATPase of Escherichia coli.
    J Bacteriol. 1992 Apr;174(7):2145-51 PMID: 1532387
  30. KdpD and KdpE, proteins that control expression of the kdpABC operon, are members of the two-component sensor-effector class of regulators.
    J Bacteriol. 1992 Apr;174(7):2152-9 PMID: 1532388
  31. Analysis of an upstream regulatory sequence required for activation of the regulatory gene xylS in xylene metabolism directed by the TOL plasmid of Pseudomonas putida.
    Mol Gen Genet. 1992 Jun;233(3):419-26 PMID: 1620097
  32. Identification of a new gene, tmoF, in the Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase.
    J Bacteriol. 1992 Nov;174(22):7253-61 PMID: 1429451
  33. Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators.
    J Bacteriol. 1993 Mar;175(6):1596-604 PMID: 8449869
  34. Protein HU binds specifically to kinked DNA.
    Mol Microbiol. 1993 Feb;7(3):343-50 PMID: 8459763
  35. The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains.
    J Bacteriol. 1993 Oct;175(19):6067-74 PMID: 8407777
  36. Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600.
    J Bacteriol. 1994 Mar;176(6):1555-60 PMID: 8132448
  37. Genetic evidence for activation of the positive transcriptional regulator Xy1R, a member of the NtrC family of regulators, by effector binding.
    J Biol Chem. 1994 Mar 18;269(11):8059-62 PMID: 8132529
  38. A novel toluene-3-monooxygenase pathway cloned from Pseudomonas pickettii PKO1.
    J Bacteriol. 1994 Jun;176(12):3749-56 PMID: 8206853
  39. Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes.
    J Bacteriol. 1994 Aug;176(16):5052-8 PMID: 8051017
  40. Co-regulation by bent DNA. Functional substitutions of the integration host factor site at sigma 54-dependent promoter Pu of the upper-TOL operon by intrinsically curved sequences.
    J Biol Chem. 1994 Sep 9;269(36):22657-62 PMID: 8077217
  41. Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways.
    Mol Microbiol. 1993 Sep;9(5):923-9 PMID: 7934920
  42. An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols.
    J Bacteriol. 1994 Dec;176(24):7550-7 PMID: 8002579
  43. The sensor kinase KdpD and the response regulator KdpE control expression of the kdpFABC operon in Escherichia coli.
    Res Microbiol. 1994 Jun-Aug;145(5-6):374-81 PMID: 7855422
  44. Sequence analysis of the gene cluster encoding toluene-3-monooxygenase from Pseudomonas pickettii PKO1.
    Gene. 1995 Feb 27;154(1):65-70 PMID: 7867951
  45. Aromatic effector activation of the NtrC-like transcriptional regulator PhhR limits the catabolic potential of the (methyl)phenol degradative pathway it controls.
    J Bacteriol. 1995 Mar;177(6):1485-90 PMID: 7883704
  46. The sigma 54-dependent promoter Ps of the TOL plasmid of Pseudomonas putida requires HU for transcriptional activation in vivo by XylR.
    J Bacteriol. 1995 Jul;177(13):3758-63 PMID: 7601841
  47. Catechol 2,3-dioxygenases functional in oxygen-limited (hypoxic) environments.
    Appl Environ Microbiol. 1996 May;62(5):1728-40 PMID: 8633871
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1996-11-00
Pages
6327-37
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC178508
Subset
IM
Grants
NIEHS NIH HHS · ES-04911 · United States
NCRR NIH HHS · M01RR00042 · United States
Databases
GENBANK
U72645
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]