Home LiteratureArticle Details
PMID: 9799243 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Phosphorylation-dephosphorylation differentially affects activities of splicing factor ASF/SF2.

The EMBO journal ·Vol. 17 ·No. 21 ·1998-11-02 ·Pages 6359-67

Xiao SH, Manley JL

Abstract

SR proteins are a conserved family of splicing factors that function in both constitutive and activated splicing. We reported previously that phosphorylation of the SR protein ASF/SF2 enhances its interaction with the U1 snRNP-specific 70K protein and is required for the protein to function in splicing, while other studies have provided evidence that subsequent dephosphorylation can also be required for SR protein function, at least in constitutive splicing. We now show that the phosphorylation status of ASF/SF2 can differentially affect several properties of the protein. In keeping with a dynamic cycle of phosphorylation-dephosphorylation during splicing, ASF/SF2 phosphorylation was found to affect interaction with several putative protein targets in different ways: positively, negatively or not at all. Extending these results, we also show that, in contrast to constitutive splicing, dephosphorylation is not required for ASF/SF2 to function as a splicing activator. We discuss these results with respect to the differential protein-protein interactions that must occur during constitutive and activated splicing.

MeSH Terms
Adenosine Triphosphate/analogs & derivatives,metabolism Animals Cell Extracts DNA-Binding Proteins/genetics Drosophila/metabolism Drosophila Proteins Gene Products, tat/genetics HeLa Cells Humans Insect Proteins/genetics Nuclear Proteins/metabolism Phosphoproteins/metabolism Phosphorylation Protein Binding RNA Precursors/genetics RNA Splicing/genetics RNA, Viral/genetics RNA-Binding Proteins/metabolism Recombinant Fusion Proteins/genetics Ribonucleoproteins/metabolism Serine-Arginine Splicing Factors Splicing Factor U2AF
Chemicals
Cell Extracts DNA-Binding Proteins DSX protein, Drosophila Drosophila Proteins Gene Products, tat Insect Proteins Nuclear Proteins Phosphoproteins RNA Precursors RNA, Viral RNA-Binding Proteins Recombinant Fusion Proteins Ribonucleoproteins Splicing Factor U2AF U2AF2 protein, human Serine-Arginine Splicing Factors adenosine 5'-O-(3-thiotriphosphate) Adenosine Triphosphate
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Xiao S H
Department of Biological Sciences, Columbia University, New York, NY 10027, USA.
Manley J L
References (69)
69 references, click to expand
  1. Adenosine phosphorothioates (ATP alpha S and ATP tau S) differentially affect the two steps of mammalian pre-mRNA splicing.
    J Biol Chem. 1992 Mar 5;267(7):4322-6 PMID: 1531649
  2. Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors.
    Science. 1994 Sep 16;265(5179):1706-9 PMID: 8085156
  3. The superfamily of arginine/serine-rich splicing factors.
    RNA. 1995 Sep;1(7):663-80 PMID: 7585252
  4. A complex of nuclear proteins mediates SR protein binding to a purine-rich splicing enhancer.
    Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):7582-7 PMID: 8755518
  5. The structure and function of proteins involved in mammalian pre-mRNA splicing.
    Annu Rev Biochem. 1996;65:367-409 PMID: 8811184
  6. Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer.
    Proc Natl Acad Sci U S A. 1997 Feb 18;94(4):1148-53 PMID: 9037021
  7. SR proteins and splicing control.
    Genes Dev. 1996 Jul 1;10(13):1569-79 PMID: 8682289
  8. A splicing enhancer complex controls alternative splicing of doublesex pre-mRNA.
    Cell. 1993 Jul 16;74(1):105-14 PMID: 8334698
  9. A protein factor, ASF, controls cell-specific alternative splicing of SV40 early pre-mRNA in vitro.
    Cell. 1990 Jul 13;62(1):25-34 PMID: 2163768
  10. Ser/Thr-specific protein phosphatases are required for both catalytic steps of pre-mRNA splicing.
    Nucleic Acids Res. 1992 Oct 25;20(20):5263-9 PMID: 1331983
  11. Purification and characterization of pre-mRNA splicing factor SF2 from HeLa cells.
    Genes Dev. 1990 Jul;4(7):1158-71 PMID: 2145194
  12. Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer.
    Genes Dev. 1996 Aug 15;10(16):2089-101 PMID: 8769651
  13. Thiophosphorylation of U1-70K protein inhibits pre-mRNA splicing.
    Nature. 1993 May 20;363(6426):283-6 PMID: 8387646
  14. Compartmentalization of eukaryotic gene expression: causes and effects.
    Cell. 1997 Oct 31;91(3):291-4 PMID: 9363936
  15. Functional expression of cloned human splicing factor SF2: homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators.
    Cell. 1991 Jul 26;66(2):383-94 PMID: 1830244
  16. U1 snRNP-ASF/SF2 interaction and 5' splice site recognition: characterization of required elements.
    Nucleic Acids Res. 1995 Aug 25;23(16):3260-7 PMID: 7667103
  17. RNA splicing specificity determined by the coordinated action of RNA recognition motifs in SR proteins.
    Proc Natl Acad Sci U S A. 1997 Apr 15;94(8):3596-601 PMID: 9108022
  18. Members of a family of proteins (the RD family) detected by a U1 70K monoclonal antibody are present in spliceosomal complexes.
    Nucleic Acids Res. 1995 Oct 25;23(20):4081-6 PMID: 7479068
  19. The tat/rev intron of human immunodeficiency virus type 1 is inefficiently spliced because of suboptimal signals in the 3' splice site.
    J Virol. 1994 May;68(5):3071-9 PMID: 7512159
  20. A monoclonal antibody that recognizes a phosphorylated epitope stains lampbrush chromosome loops and small granules in the amphibian germinal vesicle.
    J Cell Biol. 1990 Dec;111(6 Pt 1):2217-23 PMID: 1703534
  21. Overexpression of the SR proteins ASF/SF2 and SC35 influences alternative splicing in vivo in diverse ways.
    RNA. 1995 May;1(3):335-46 PMID: 7489505
  22. The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities.
    EMBO J. 1995 Jul 17;14(14):3540-51 PMID: 7543047
  23. Identification of positive and negative splicing regulatory elements within the terminal tat-rev exon of human immunodeficiency virus type 1.
    Mol Cell Biol. 1995 Aug;15(8):4597-605 PMID: 7623851
  24. The role of specific protein-RNA and protein-protein interactions in positive and negative control of pre-mRNA splicing by Transformer 2.
    Cell. 1994 Feb 25;76(4):735-46 PMID: 8124712
  25. A U6 snRNA:pre-mRNA interaction can be rate-limiting for U1-independent splicing.
    Genes Dev. 1995 Sep 15;9(18):2314-23 PMID: 7557384
  26. Complementation by SR proteins of pre-mRNA splicing reactions depleted of U1 snRNP.
    Science. 1994 Sep 23;265(5180):1866-9 PMID: 8091213
  27. Specific commitment of different pre-mRNAs to splicing by single SR proteins.
    Nature. 1993 Sep 2;365(6441):82-5 PMID: 8361546
  28. The SR protein family: pleiotropic functions in pre-mRNA splicing.
    Trends Biochem Sci. 1996 Aug;21(8):296-301 PMID: 8772383
  29. Exon recognition in vertebrate splicing.
    J Biol Chem. 1995 Feb 10;270(6):2411-4 PMID: 7852296
  30. SR proteins promote the first specific recognition of Pre-mRNA and are present together with the U1 small nuclear ribonucleoprotein particle in a general splicing enhancer complex.
    Mol Cell Biol. 1994 Nov;14(11):7670-82 PMID: 7935481
  31. A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription.
    J Cell Biol. 1991 Nov;115(3):587-96 PMID: 1717489
  32. Protein phosphorylation and the nuclear organization of pre-mRNA splicing.
    Trends Cell Biol. 1997 Apr;7(4):135-8 PMID: 17708924
  33. Accumulation of a novel spliceosomal complex on pre-mRNAs containing branch site mutations.
    Mol Cell Biol. 1995 Oct;15(10):5750-6 PMID: 7565727
  34. Localization of pre-mRNA splicing in mammalian nuclei.
    Nature. 1994 Dec 22-29;372(6508):809-12 PMID: 7997273
  35. General splicing factors SF2 and SC35 have equivalent activities in vitro, and both affect alternative 5' and 3' splice site selection.
    Proc Natl Acad Sci U S A. 1992 Dec 1;89(23):11224-8 PMID: 1454802
  36. Intrinsic U2AF binding is modulated by exon enhancer signals in parallel with changes in splicing activity.
    RNA. 1995 Mar;1(1):21-35 PMID: 7489484
  37. Dynamic RNA-RNA interactions in the spliceosome.
    Annu Rev Genet. 1994;28:1-26 PMID: 7534458
  38. Both phosphorylation and dephosphorylation of ASF/SF2 are required for pre-mRNA splicing in vitro.
    RNA. 1997 Dec;3(12):1456-67 PMID: 9404896
  39. A serine kinase regulates intracellular localization of splicing factors in the cell cycle.
    Nature. 1994 Jun 23;369(6482):678-82 PMID: 8208298
  40. Pathways for selection of 5' splice sites by U1 snRNPs and SF2/ASF.
    EMBO J. 1993 Sep;12(9):3607-17 PMID: 8253084
  41. SR proteins: a conserved family of pre-mRNA splicing factors.
    Genes Dev. 1992 May;6(5):837-47 PMID: 1577277
  42. The human splicing factor ASF/SF2 can specifically recognize pre-mRNA 5' splice sites.
    Proc Natl Acad Sci U S A. 1994 Apr 12;91(8):3363-7 PMID: 7512732
  43. Intron-dependent recruitment of pre-mRNA splicing factors to sites of transcription.
    J Cell Biol. 1996 May;133(4):719-32 PMID: 8666659
  44. Cloning and domain structure of the mammalian splicing factor U2AF.
    Nature. 1992 Feb 13;355(6361):609-14 PMID: 1538748
  45. SR proteins escort the U4/U6.U5 tri-snRNP to the spliceosome.
    RNA. 1995 Sep;1(7):692-706 PMID: 7585254
  46. General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer.
    Genes Dev. 1993 Dec;7(12B):2598-608 PMID: 8276242
  47. The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing.
    Genes Dev. 1996 Jun 1;10(11):1356-68 PMID: 8647433
  48. The dynamics of a pre-mRNA splicing factor in living cells.
    Nature. 1997 May 29;387(6632):523-7 PMID: 9168118
  49. Cloning and intracellular localization of the U2 small nuclear ribonucleoprotein auxiliary factor small subunit.
    Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8769-73 PMID: 1388271
  50. Disruption of base pairing between the 5' splice site and the 5' end of U1 snRNA is required for spliceosome assembly.
    Cell. 1993 Dec 3;75(5):863-73 PMID: 8252623
  51. Primary structure of the human splicing factor ASF reveals similarities with Drosophila regulators.
    Cell. 1991 Jul 26;66(2):373-82 PMID: 1855257
  52. Regulation of mammalian spliceosome assembly by a protein phosphorylation mechanism.
    EMBO J. 1994 Dec 1;13(23):5679-88 PMID: 7988565
  53. Specific interactions between proteins implicated in splice site selection and regulated alternative splicing.
    Cell. 1993 Dec 17;75(6):1061-70 PMID: 8261509
  54. The Clk/Sty protein kinase phosphorylates SR splicing factors and regulates their intranuclear distribution.
    EMBO J. 1996 Jan 15;15(2):265-75 PMID: 8617202
  55. Dynamic relocation of transcription and splicing factors dependent upon transcriptional activity.
    EMBO J. 1997 Mar 17;16(6):1401-12 PMID: 9135155
  56. Phosphorylation of the ASF/SF2 RS domain affects both protein-protein and protein-RNA interactions and is necessary for splicing.
    Genes Dev. 1997 Feb 1;11(3):334-44 PMID: 9030686
  57. Distinct functions of SR proteins in alternative pre-mRNA splicing.
    Science. 1993 Apr 9;260(5105):219-22 PMID: 8385799
  58. Genetic analysis of the SR protein ASF/SF2: interchangeability of RS domains and negative control of splicing.
    Genes Dev. 1998 Jul 15;12(14):2222-33 PMID: 9679066
  59. Modulation of 5' splice site choice in pre-messenger RNA by two distinct steps.
    Proc Natl Acad Sci U S A. 1995 Mar 28;92(7):2504-8 PMID: 7708674
  60. Arginine/serine-rich domains of SR proteins can function as activators of pre-mRNA splicing.
    Mol Cell. 1998 Apr;1(5):765-71 PMID: 9660960
  61. The essential pre-mRNA splicing factor SF2 influences 5' splice site selection by activating proximal sites.
    Cell. 1990 Jul 13;62(1):35-42 PMID: 2364434
  62. Distinct functions of SR proteins in recruitment of U1 small nuclear ribonucleoprotein to alternative 5' splice sites.
    Proc Natl Acad Sci U S A. 1995 Mar 28;92(7):2642-6 PMID: 7708698
  63. A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer.
    Mol Cell Biol. 1995 Sep;15(9):4898-907 PMID: 7651409
  64. Interaction of U2AF65 RS region with pre-mRNA branch point and promotion of base pairing with U2 snRNA [corrected].
    Science. 1996 Sep 20;273(5282):1706-9 PMID: 8781232
  65. Protein-protein interactions and 5'-splice-site recognition in mammalian mRNA precursors.
    Nature. 1994 Mar 10;368(6467):119-24 PMID: 8139654
  66. Isolation of a complementary DNA that encodes the mammalian splicing factor SC35.
    Science. 1992 Apr 24;256(5056):535-8 PMID: 1373910
  67. Synergistic interactions between two distinct elements of a regulated splicing enhancer.
    Genes Dev. 1995 Feb 1;9(3):284-93 PMID: 7867927
  68. Splicing efficiency of human immunodeficiency virus type 1 tat RNA is determined by both a suboptimal 3' splice site and a 10 nucleotide exon splicing silencer element located within tat exon 2.
    Nucleic Acids Res. 1997 Feb 15;25(4):861-7 PMID: 9016638
  69. Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing.
    Cell. 1998 Apr 3;93(1):139-48 PMID: 9546399
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1998-11-02
Pages
6359-67
Language
English
Region
England
NLM ID
8208664
PMCID
PMC1170960
Subset
IM
Grants
NIGMS NIH HHS · GM48259 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]