Home LiteratureArticle Details
PMID: 12760017 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Review

Adaptive mutation in Escherichia coli.

Cold Spring Harbor symposia on quantitative biology ·Vol. 65 ·2000-00-00 ·Pages 21-9

Foster PL

Abstract

暂无摘要

MeSH Terms
Adaptation, Physiological/genetics Escherichia coli/genetics Models, Genetic Mutation Recombination, Genetic
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Foster P L
Department of Biology, Jordan Hall 142, Indiana University, Bloomington, Indiana 47405-6801, USA.
References (76)
76 references, click to expand
  1. The SOS response regulates adaptive mutation.
    Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6646-51 PMID: 10829077
  2. Adaptive reversion of a frameshift mutation in Escherichia coli by simple base deletions in homopolymeric runs.
    Science. 1994 Jul 15;265(5170):407-9 PMID: 8023164
  3. Mutagenic specificity of ultraviolet light.
    J Mol Biol. 1985 Mar 5;182(1):45-65 PMID: 3923204
  4. Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression.
    Cell. 2000 Mar 31;101(1):35-45 PMID: 10778854
  5. Reverse branch migration of Holliday junctions by RecG protein: a new mechanism for resolution of intermediates in recombination and DNA repair.
    Cell. 1993 Oct 22;75(2):341-50 PMID: 8402917
  6. DNA synthesis errors associated with double-strand-break repair.
    Genetics. 1995 Jul;140(3):965-72 PMID: 7672595
  7. UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.
    Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):8919-24 PMID: 10430871
  8. Enzymes of evolutionary change.
    Nature. 1999 Oct 28;401(6756):866-7, 869 PMID: 10553899
  9. Role of Escherichia coli RecBC enzyme in SOS induction.
    Mol Gen Genet. 1985;201(3):525-8 PMID: 3911029
  10. The origin of mutants.
    Nature. 1988 Sep 8;335(6186):142-5 PMID: 3045565
  11. The role of oriT in tra-dependent enhanced recombination between mini-F-lac-oriT and lambda plac5.
    Genet Res. 1992 Jun;59(3):157-65 PMID: 1511865
  12. Adaptive mutation by deletions in small mononucleotide repeats.
    Science. 1994 Jul 15;265(5170):405-7 PMID: 8023163
  13. The importance of repairing stalled replication forks.
    Nature. 2000 Mar 2;404(6773):37-41 PMID: 10716434
  14. Evidence that stationary-phase hypermutation in the Escherichia coli chromosome is promoted by recombination.
    Genetics. 2000 Apr;154(4):1427-37 PMID: 10747042
  15. Is RecF a DNA replication protein?
    Proc Natl Acad Sci U S A. 1997 Apr 15;94(8):3483-4 PMID: 9108000
  16. Enhanced recombination between lambda plac5 and F42lac: identification of cis- and trans-acting factors.
    Proc Natl Acad Sci U S A. 1984 Dec;81(23):7500-4 PMID: 6095300
  17. Adaptive reversion of an episomal frameshift mutation in Escherichia coli requires conjugal functions but not actual conjugation.
    Proc Natl Acad Sci U S A. 1995 Jun 6;92(12):5487-90 PMID: 7777535
  18. The role of transient hypermutators in adaptive mutation in Escherichia coli.
    Proc Natl Acad Sci U S A. 1999 Jun 8;96(12):6862-7 PMID: 10359804
  19. traY and traI are required for oriT-dependent enhanced recombination between lac-containing plasmids and lambda plac5.
    J Bacteriol. 1991 Feb;173(3):1027-34 PMID: 1846851
  20. Differential suppression of priA2::kan phenotypes in Escherichia coli K-12 by mutations in priA, lexA, and dnaC.
    Genetics. 1996 May;143(1):5-13 PMID: 8722757
  21. Spontaneous and UV-induced mutations in Escherichia coli K-12 strains with altered or absent DNA polymerase I.
    J Bacteriol. 1989 May;171(5):2480-4 PMID: 2651403
  22. Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells.
    J Bacteriol. 1996 Apr;178(8):2388-96 PMID: 8636043
  23. RuvAB acts at arrested replication forks.
    Cell. 1998 Oct 30;95(3):419-30 PMID: 9814711
  24. Adaptive mutation: has the unicorn landed?
    Genetics. 1998 Apr;148(4):1453-9 PMID: 9560365
  25. Opposing roles of the holliday junction processing systems of Escherichia coli in recombination-dependent adaptive mutation.
    Genetics. 1996 Mar;142(3):681-91 PMID: 8849879
  26. Observations on the formation of clones containing araB-lacZ cistron fusions.
    Mol Gen Genet. 1984;194(1-2):79-90 PMID: 6233472
  27. Is DNA replication a necessary condition for spontaneous mutation?
    Z Vererbungsl. 1961;92:38-41 PMID: 13744985
  28. Are adaptive mutations due to a decline in mismatch repair? The evidence is lacking.
    Mutat Res. 1999 Mar;436(2):179-84 PMID: 10095139
  29. Transient mutators: a semiquantitative analysis of the influence of translation and transcription errors on mutation rates.
    Genetics. 1991 Nov;129(3):957-62 PMID: 1752431
  30. Some features of the mutability of bacteria during nonlethal selection.
    Genetics. 2000 Jan;154(1):49-59 PMID: 10628968
  31. Increased episomal replication accounts for the high rate of adaptive mutation in recD mutants of Escherichia coli.
    Genetics. 1999 May;152(1):15-30 PMID: 10224241
  32. Adaptive mutation: the uses of adversity.
    Annu Rev Microbiol. 1993;47:467-504 PMID: 8257106
  33. Coping with replication 'train wrecks' in Escherichia coli using Pol V, Pol II and RecA proteins.
    Trends Biochem Sci. 2000 Apr;25(4):189-95 PMID: 10754553
  34. Conjugation is not required for adaptive reversion of an episomal frameshift mutation in Escherichia coli.
    J Bacteriol. 1995 Nov;177(22):6670-1 PMID: 7592449
  35. Resolution of Holliday intermediates in recombination and DNA repair: indirect suppression of ruvA, ruvB, and ruvC mutations.
    J Bacteriol. 1993 Jul;175(14):4325-34 PMID: 8331065
  36. Double-strand end repair via the RecBC pathway in Escherichia coli primes DNA replication.
    Genes Dev. 1999 Feb 1;13(3):345-56 PMID: 9990858
  37. Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli.
    Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7951-5 PMID: 7644519
  38. Nonadaptive mutations occur on the F' episome during adaptive mutation conditions in Escherichia coli.
    J Bacteriol. 1997 Mar;179(5):1550-4 PMID: 9045812
  39. A phenotype for enigmatic DNA polymerase II: a pivotal role for pol II in replication restart in UV-irradiated Escherichia coli.
    Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9224-9 PMID: 10430924
  40. Mechanisms of directed mutation.
    Genetics. 1992 Aug;131(4):783-9 PMID: 1516815
  41. Mechanism for induction of adaptive mutations in Escherichia coli.
    Mol Microbiol. 1990 Apr;4(4):597-601 PMID: 2191182
  42. The dinB gene encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis.
    Mol Cell. 1999 Aug;4(2):281-6 PMID: 10488344
  43. A genetic strategy to demonstrate the occurrence of spontaneous mutations in nondividing cells within colonies of Escherichia coli.
    Genetics. 1997 Nov;147(3):991-1001 PMID: 9383047
  44. F- phenocopies: characterization of expression of the F transfer region in stationary phase.
    Microbiology. 1998 Sep;144 ( Pt 9):2579-87 PMID: 9782507
  45. Recombination in adaptive mutation.
    Science. 1994 Apr 8;264(5156):258-60 PMID: 8146657
  46. Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in Escherichia coli.
    Genetics. 1996 Jan;142(1):25-37 PMID: 8770582
  47. Multiple pathways for SOS-induced mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA.
    Proc Natl Acad Sci U S A. 1997 Dec 9;94(25):13792-7 PMID: 9391106
  48. Spontaneous Mutation in Non-Dividing Bacteria.
    Genetics. 1955 Sep;40(5):726-38 PMID: 17247585
  49. Genetic analysis of the recG locus of Escherichia coli K-12 and of its role in recombination and DNA repair.
    J Bacteriol. 1991 Feb;173(3):1004-11 PMID: 1846849
  50. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda.
    Microbiol Mol Biol Rev. 1999 Dec;63(4):751-813, table of contents PMID: 10585965
  51. The DNA replication priming protein, PriA, is required for homologous recombination and double-strand break repair.
    J Bacteriol. 1996 Mar;178(5):1258-64 PMID: 8631700
  52. Involvement of Escherichia coli DNA polymerase II in response to oxidative damage and adaptive mutation.
    J Bacteriol. 1994 Oct;176(20):6221-8 PMID: 7928992
  53. Recombination and recombination-dependent DNA replication in bacteriophage T4.
    Annu Rev Genet. 1998;32:379-413 PMID: 9928485
  54. A role for REV3 in mutagenesis during double-strand break repair in Saccharomyces cerevisiae.
    Genetics. 1997 Nov;147(3):1017-24 PMID: 9383049
  55. Adaptive mutation in Escherichia coli: a role for conjugation.
    Science. 1995 Apr 21;268(5209):418-20 PMID: 7716545
  56. Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis.
    Nature. 2000 Apr 27;404(6781):1014-8 PMID: 10801133
  57. Mutation and cancer: the antecedents to our studies of adaptive mutation.
    Genetics. 1998 Apr;148(4):1433-40 PMID: 9560363
  58. Spontaneous point mutations that occur more often when advantageous than when neutral.
    Genetics. 1990 Sep;126(1):5-16 PMID: 2227388
  59. Mutations of Bacteria from Virus Sensitivity to Virus Resistance.
    Genetics. 1943 Nov;28(6):491-511 PMID: 17247100
  60. Stable DNA replication: interplay between DNA replication, homologous recombination, and transcription.
    Microbiol Mol Biol Rev. 1997 Jun;61(2):212-38 PMID: 9184011
  61. A direct role for DNA polymerase III in adaptive reversion of a frameshift mutation in Escherichia coli.
    Mutat Res. 1997 Apr 14;375(1):19-24 PMID: 9129676
  62. Genetic and sequence analysis of frameshift mutations induced by ICR-191.
    J Mol Biol. 1981 Nov 25;153(1):39-64 PMID: 7040679
  63. Antimutator mutations in the alpha subunit of Escherichia coli DNA polymerase III: identification of the responsible mutations and alignment with other DNA polymerases.
    Genetics. 1993 Aug;134(4):1039-44 PMID: 8375647
  64. Lac repressor can be fused to beta-galactosidase.
    Nature. 1974 Jun 7;249(457):561-3 PMID: 4599764
  65. Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation.
    EMBO J. 1997 Jun 2;16(11):3303-11 PMID: 9214645
  66. Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon.
    Science. 1998 Nov 6;282(5391):1133-5 PMID: 9804552
  67. Adaptive reversion of a frameshift mutation in Escherichia coli.
    Genetics. 1991 Aug;128(4):695-701 PMID: 1916241
  68. Population dynamics of a Lac- strain of Escherichia coli during selection for lactose utilization.
    Genetics. 1994 Oct;138(2):253-61 PMID: 7828809
  69. Evidence that recBC-dependent degradation of duplex DNA in Escherichia coli recD mutants involves DNA unwinding.
    J Bacteriol. 1992 Aug;174(16):5424-9 PMID: 1322885
  70. Branch migration of three-strand recombination intermediates by RecG, a possible pathway for securing exchanges initiated by 3'-tailed duplex DNA.
    EMBO J. 1995 Jul 17;14(14):3302-10 PMID: 7628432
  71. Bacterial genetics. A unicorn in the garden.
    Nature. 1988 Sep 8;335(6186):112-3 PMID: 3412467
  72. Mismatch repair in replication fidelity, genetic recombination, and cancer biology.
    Annu Rev Biochem. 1996;65:101-33 PMID: 8811176
  73. Mechanisms of stationary phase mutation: a decade of adaptive mutation.
    Annu Rev Genet. 1999;33:57-88 PMID: 10690404
  74. Initiation of genetic recombination and recombination-dependent replication.
    Trends Biochem Sci. 2000 Apr;25(4):156-65 PMID: 10754547
  75. Evidence that F plasmid transfer replication underlies apparent adaptive mutation.
    Science. 1995 Apr 21;268(5209):421-3 PMID: 7716546
  76. Collapse and repair of replication forks in Escherichia coli.
    Mol Microbiol. 1995 May;16(3):373-84 PMID: 7565099
Article Info
Journal
Cold Spring Harbor symposia on quantitative biology
Abbr.
Cold Spring Harb Symp Quant Biol
ISSN
0091-7451
Published
2000-00-00
Pages
21-9
Language
English
Region
United States
NLM ID
1256107
PMCID
PMC2929248
Subset
IM
Grants
NIGMS NIH HHS · R01 GM054084-03 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]