Abstract
The nucleotide sequence of Dictyostelium discoideum rDNA extending over almost the entire transcribed region and a part of the 5' non-transcribed spacer region has been determined. Computer analysis revealed that there were several conserved sequences in the 17S, 5.8S and 26S coding regions when compared with the sequences at analogous positions in some eukaryotic rRNA genes. The data also showed that the D. discoideum rDNA contains several extra sequences, which have not been found in other eukaryotes' rDNAs , near the 3' terminus of the 17S coding region and the 5' terminus of the 26S coding region.
MeSH Terms
Animals
Base Sequence
DNA/genetics
DNA Restriction Enzymes
DNA, Ribosomal
Dictyostelium/genetics
Genes
Genes, Fungal
Physarum/genetics
RNA, Ribosomal/genetics
Rats
Saccharomyces cerevisiae/genetics
Species Specificity
Transcription, Genetic
Xenopus
Chemicals
DNA, Ribosomal
RNA, Ribosomal
DNA
DNA Restriction Enzymes
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Ozaki T
Hoshikawa Y
Iida Y
Iwabuchi M
References (24)
24 references, click to expand
-
The nucleotide sequence of Saccharomyces cerevisiae 5.8 S ribosomal ribonucleic acid.
J Biol Chem. 1973 Jun 10;248(11):3860-75
PMID: 4575197
-
The structure of rat 28S ribosomal ribonucleic acid inferred from the sequence of nucleotides in a gene.
Nucleic Acids Res. 1983 Nov 25;11(22):7819-31
PMID: 6316273
-
A simple method for DNA restriction site mapping.
Nucleic Acids Res. 1976 Sep;3(9):2387-98
PMID: 787937
-
Organization of the ribosomal RNA genes of Dictyostelium discoideum: mapping of the nontranscribed spacer regions.
Cell. 1976 Dec;9(4 Pt 1):605-13
PMID: 1034500
-
A new method for sequencing DNA.
Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4
PMID: 265521
-
Secondary structure of the Dictyostelium discoideum small subunit ribosomal RNA.
Nucleic Acids Res. 1983 Nov 25;11(22):8037-49
PMID: 6359065
-
Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids.
Cell. 1977 Nov;12(3):721-32
PMID: 922889
-
Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.
Proc Natl Acad Sci U S A. 1978 Oct;75(10):4801-5
PMID: 368799
-
Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli.
Proc Natl Acad Sci U S A. 1980 Jan;77(1):201-4
PMID: 6153795
-
Some characteristics of processing sites in ribosomal precursor RNA of yeast.
Nucleic Acids Res. 1980 Jul 11;8(13):2907-20
PMID: 6253896
-
The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae.
Nucleic Acids Res. 1980 Dec 11;8(23):5779-94
PMID: 7008030
-
Nucleotide sequence through the 18S-28S intergene region of a vertebrate ribosomal transcription unit.
Nucleic Acids Res. 1980 Dec 20;8(24):5993-6005
PMID: 6258158
-
Nucleotide sequence of Xenopus laevis 18S ribosomal RNA inferred from gene sequence.
Nature. 1981 May 21;291(5812):205-8
PMID: 7015146
-
Sequence homologies between eukaryotic 5.8S rRNA and the 5' end of prokaryotic 23S rRNa: evidences for a common evolutionary origin.
Nucleic Acids Res. 1981 Jun 25;9(12):2913-32
PMID: 7024907
-
The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript.
Nucleic Acids Res. 1981 Oct 10;9(19):4847-62
PMID: 7312619
-
The structure of the yeast ribosomal RNA genes. 4. Complete sequence of the 25 S rRNA gene from Saccharomyces cerevisae.
Nucleic Acids Res. 1981 Dec 21;9(24):6953-8
PMID: 6460984
-
Nucleotide sequence of Physarum polycephalum 5.8S rRNA gene and its flanking regions.
Nucleic Acids Res. 1982 Apr 10;10(7):2379-85
PMID: 6283479
-
Nucleotide sequence of Dictyostelium discoideum 5.8S ribosomal ribonucleic acid: evolutionary and secondary structural implications.
Biochemistry. 1982 May 11;21(10):2335-43
PMID: 7093192
-
Nucleotide sequence of the region between the 18S rRNA sequence and the 28S rRNA sequence of rat ribosomal DNA.
Nucleic Acids Res. 1982 Jun 25;10(12):3667-80
PMID: 6287418
-
Nucleotide sequence of the transcriptional initiation region of Dictyostelium discoideum rRNA gene and comparison of the initiation regions of three lower eukaryotes' genes.
Nucleic Acids Res. 1983 Mar 25;11(6):1725-34
PMID: 6300775
-
Complete nucleotide sequence of the 26S rRNA gene of Physarum polycephalum: its significance in gene evolution.
Proc Natl Acad Sci U S A. 1983 Jun;80(11):3163-7
PMID: 6304693
-
The complete nucleotide sequence of the rat 18S ribosomal RNA gene and comparison with the respective yeast and frog genes.
Nucleic Acids Res. 1983 Jul 25;11(14):4879-90
PMID: 6308563
-
Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis.
Nucleic Acids Res. 1983 Nov 25;11(22):7795-817
PMID: 6359063
-
Conservation of the 5'-terminal nucleotide sequences of ribosomal 18-S RNA in eukaryotes. Differential evolution of large and small ribosomal RNA.
Eur J Biochem. 1976 Apr 1;63(2):339-50
PMID: 944127