Home LiteratureArticle Details
PMID: 9864345 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Regulation of the sol locus genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 by a putative transcriptional repressor.

Journal of bacteriology ·Vol. 181 ·No. 1 ·1999-01-00 ·Pages 319-30

Nair RV, Green EM, Watson DE, Bennett GN, Papoutsakis ET

Abstract

A gene (orf1, now designated solR) previously identified upstream of the aldehyde/alcohol dehydrogenase gene aad (R. V. Nair, G. N. Bennett, and E. T. Papoutsakis, J. Bacteriol. 176:871-885, 1994) was found to encode a repressor of the sol locus (aad, ctfA, ctfB and adc) genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824. Primer extension analysis identified a transcriptional start site 35 bp upstream of the solR start codon. Amino acid comparisons of SolR identified a potential helix-turn-helix DNA-binding motif in the C-terminal half towards the center of the protein, suggesting a regulatory role. Overexpression of SolR in strain ATCC 824(pCO1) resulted in a solvent-negative phenotype owing to its deleterious effect on the transcription of the sol locus genes. Inactivation of solR in C. acetobutylicum via homologous recombination yielded mutants B and H (ATCC 824 solR::pO1X) which exhibited deregulated solvent production characterized by increased flux towards butanol and acetone formation, earlier induction of aad, lower overall acid production, markedly improved yields of solvents on glucose, a prolonged solvent production phase, and increased biomass accumulation compared to those of the wild-type strain.

MeSH Terms
1-Butanol/metabolism Acetone/metabolism Amino Acid Sequence Bacterial Proteins/chemistry,genetics,metabolism Base Sequence Clostridium/genetics,metabolism DNA Primers/genetics Fermentation Gene Expression Genes, Bacterial Molecular Sequence Data Mutation Open Reading Frames Plasmids/genetics Protein Structure, Secondary Repressor Proteins/chemistry,genetics,metabolism Sequence Homology, Amino Acid Transcription, Genetic
Chemicals
Bacterial Proteins DNA Primers Repressor Proteins Acetone 1-Butanol
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Nair R V
Department of Chemical Engineering, Northwestern University, Evanston, Illinois 60208, USA.
Green E M
Watson D E
Bennett G N
Papoutsakis E T
References (69)
69 references, click to expand
  1. Cloning, sequencing, and molecular analysis of the acetoacetate decarboxylase gene region from Clostridium acetobutylicum.
    J Bacteriol. 1990 Dec;172(12):6907-18 PMID: 2254264
  2. Molecular characterization of two Clostridium acetobutylicum ATCC 824 butanol dehydrogenase isozyme genes.
    J Bacteriol. 1992 Nov;174(22):7149-58 PMID: 1385386
  3. The spo0K locus of Bacillus subtilis is homologous to the oligopeptide permease locus and is required for sporulation and competence.
    J Bacteriol. 1991 Feb;173(4):1388-98 PMID: 1899858
  4. Cloning and expression of Clostridium acetobutylicum phosphotransbutyrylase and butyrate kinase genes in Escherichia coli.
    J Bacteriol. 1988 Oct;170(10):4613-8 PMID: 2844725
  5. Primary structure of the phage P22 repressor and its gene c2.
    Biochemistry. 1981 Jun 9;20(12):3591-8 PMID: 7260059
  6. The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain.
    J Bacteriol. 1997 Sep;179(17):5442-7 PMID: 9286999
  7. Characterization of the spo0A locus and its deduced product.
    Proc Natl Acad Sci U S A. 1985 May;82(9):2647-51 PMID: 3157992
  8. Cloning, structure, and expression of acid and solvent pathway genes of Clostridium acetobutylicum.
    Biotechnology. 1993;25:157-99 PMID: 7691287
  9. The PRINTS protein fingerprint database in its fifth year.
    Nucleic Acids Res. 1998 Jan 1;26(1):304-8 PMID: 9399860
  10. Cloning, sequencing, and molecular analysis of the sol operon of Clostridium acetobutylicum, a chromosomal locus involved in solventogenesis.
    J Bacteriol. 1993 Nov;175(21):6959-69 PMID: 8226639
  11. Metabolic engineering of Clostridium acetobutylicum ATCC 824 for increased solvent production by enhancement of acetone formation enzyme activities using a synthetic acetone operon.
    Biotechnol Bioeng. 1993 Nov 5;42(9):1053-60 PMID: 18613233
  12. Sequence of a Drosophila segmentation gene: protein structure homology with DNA-binding proteins.
    Nature. 1984 Jul 5-11;310(5972):25-31 PMID: 6330566
  13. The gene encoding cAMP receptor protein is required for competence development in Haemophilus influenzae Rd.
    Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1626-30 PMID: 1542653
  14. Organization of the early region of bacteriophage phi 80. Genes and proteins.
    J Mol Biol. 1988 Aug 5;202(3):537-50 PMID: 3172225
  15. Regulation of nitrogen metabolism, starch utilisation and the beta-hbd-adh1 gene cluster in Clostridium acetobutylicum.
    FEMS Microbiol Rev. 1995 Oct;17(3):299-306 PMID: 7576770
  16. Purification of acetoacetate decarboxylase from Clostridium acetobutylicum ATCC 824 and cloning of the acetoacetate decarboxylase gene in Escherichia coli.
    Appl Environ Microbiol. 1990 Nov;56(11):3491-8 PMID: 2268159
  17. Automated assembly of protein blocks for database searching.
    Nucleic Acids Res. 1991 Dec 11;19(23):6565-72 PMID: 1754394
  18. Characterization of a fixLJ-regulated Bradyrhizobium japonicum gene sharing similarity with the Escherichia coli fnr and Rhizobium meliloti fixK genes.
    J Bacteriol. 1992 Apr;174(7):2111-20 PMID: 1551834
  19. fixK, a gene homologous with fnr and crp from Escherichia coli, regulates nitrogen fixation genes both positively and negatively in Rhizobium meliloti.
    EMBO J. 1989 Apr;8(4):1279-86 PMID: 2663474
  20. Klebsiella aerogenes catabolite gene activator protein and the gene encoding it (crp).
    J Bacteriol. 1991 Oct;173(20):6626-31 PMID: 1655718
  21. High efficiency transformation of E. coli by high voltage electroporation.
    Nucleic Acids Res. 1988 Jul 11;16(13):6127-45 PMID: 3041370
  22. Taxonomy and phylogeny of industrial solvent-producing clostridia.
    Int J Syst Bacteriol. 1995 Oct;45(4):693-705 PMID: 7547288
  23. Molecular analysis and nucleotide sequence of the adh1 gene encoding an NADPH-dependent butanol dehydrogenase in the Gram-positive anaerobe Clostridium acetobutylicum.
    Gene. 1989 May 30;78(2):355-64 PMID: 2673928
  24. Intracellular Conditions Required for Initiation of Solvent Production by Clostridium acetobutylicum.
    Appl Environ Microbiol. 1986 Jul;52(1):86-91 PMID: 16347119
  25. Anaerobic growth of Rhodopseudomonas palustris on 4-hydroxybenzoate is dependent on AadR, a member of the cyclic AMP receptor protein family of transcriptional regulators.
    J Bacteriol. 1992 Sep;174(18):5803-13 PMID: 1522059
  26. The genetic engineering of microbial solvent production.
    Trends Biotechnol. 1995 Jul;13(7):259-64 PMID: 7646848
  27. The structure and function of the homeodomain.
    Biochim Biophys Acta. 1989 Jul 28;989(1):25-48 PMID: 2568852
  28. Anabaena sp. strain PCC 7120 bifA gene encoding a sequence-specific DNA-binding protein cloned by in vivo transcriptional interference selection.
    J Bacteriol. 1993 Jul;175(13):4025-35 PMID: 8391534
  29. Nucleotide sequence of the erythromycin resistance gene of the conjugative transposon Tn1545.
    Nucleic Acids Res. 1990 Jun 25;18(12):3660 PMID: 2163525
  30. Regulation of the phosphorelay and the initiation of sporulation in Bacillus subtilis.
    Annu Rev Microbiol. 1993;47:441-65 PMID: 8257105
  31. Actinobacillus pleuropneumoniae hlyX gene homology with the fnr gene of Escherichia coli.
    J Bacteriol. 1990 Aug;172(8):4587-92 PMID: 2198268
  32. Sequence and arrangement of genes encoding enzymes of the acetone-production pathway of Clostridium acetobutylicum ATCC824.
    Gene. 1993 Jan 15;123(1):93-7 PMID: 8423010
  33. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  34. crp genes of Shigella flexneri, Salmonella typhimurium, and Escherichia coli.
    J Bacteriol. 1986 Aug;167(2):639-46 PMID: 3525518
  35. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  36. Cultures of "Clostridium acetobutylicum" from various collections comprise Clostridium acetobutylicum, Clostridium beijerinckii, and two other distinct types based on DNA-DNA reassociation.
    Int J Syst Bacteriol. 1997 Apr;47(2):420-4 PMID: 9103631
  37. Recent advances in the genetics of the clostridia.
    FEMS Microbiol Rev. 1989 Dec;5(4):301-25 PMID: 2560939
  38. Cloning and characterization of a glutamine transport operon of Bacillus stearothermophilus NUB36: effect of temperature on regulation of transcription.
    J Bacteriol. 1991 Aug;173(15):4877-88 PMID: 1856180
  39. Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from Clostridium acetobutylicum ATCC 824.
    J Bacteriol. 1991 Mar;173(5):1831-4 PMID: 1999395
  40. Sigma factor and sporulation genes in Clostridium.
    FEMS Microbiol Rev. 1995 Oct;17(3):331-40 PMID: 7576771
  41. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  42. Protein-DNA recognition.
    Annu Rev Biochem. 1984;53:293-321 PMID: 6236744
  43. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  44. Cloning and DNA sequence analysis of the wild-type and mutant cyclic AMP receptor protein genes from Salmonella typhimurium.
    J Bacteriol. 1986 Aug;167(2):616-22 PMID: 3015882
  45. Molecular characterization of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824.
    J Bacteriol. 1994 Feb;176(3):871-85 PMID: 8300540
  46. An Fnr-like protein encoded in Rhizobium leguminosarum biovar viciae shows structural and functional homology to Rhizobium meliloti FixK.
    Mol Gen Genet. 1990 Aug;223(1):138-47 PMID: 2175385
  47. DNA sequence of the bacteriophage gama cI gene.
    Nature. 1978 Nov 16;276(5685):301-2 PMID: 714163
  48. In vivo methylation in Escherichia coli by the Bacillus subtilis phage phi 3T I methyltransferase to protect plasmids from restriction upon transformation of Clostridium acetobutylicum ATCC 824.
    Appl Environ Microbiol. 1993 Apr;59(4):1077-81 PMID: 8386500
  49. Complete nucleotide sequence of the Escherichia coli plasmid pBR322.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:77-90 PMID: 383387
  50. Characterization of spo0A homologues in diverse Bacillus and Clostridium species identifies a probable DNA-binding domain.
    Mol Microbiol. 1994 Nov;14(3):411-26 PMID: 7885226
  51. The effect of pH on nitrogen supply, cell lysis, and solvent production in fermentations of Clostridium acetobutylicum.
    Biotechnol Bioeng. 1985 May;27(5):681-94 PMID: 18553724
  52. Expression of cloned homologous fermentative genes in Clostridium acetobutylicum ATCC 824.
    Biotechnology (N Y). 1992 Feb;10(2):190-5 PMID: 1368230
  53. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
    Nucleic Acids Res. 1981 Jan 10;9(1):133-48 PMID: 6163133
  54. Two erythromycin-resistance plasmids of diverse origin and their effect on sporulation in Bacillus subtilis.
    J Gen Microbiol. 1980 Sep;120(1):259-63 PMID: 6783733
  55. Solventogenic enzymes of Clostridium acetobutylicum: catalytic properties, genetic organization, and transcriptional regulation.
    FEMS Microbiol Rev. 1995 Oct;17(3):251-62 PMID: 7576767
  56. Prediction of protein conformation.
    Biochemistry. 1974 Jan 15;13(2):222-45 PMID: 4358940
  57. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  58. Conserved classes of homeodomains in Schistosoma mansoni, an early bilateral metazoan.
    Mech Dev. 1992 Jul;38(1):25-32 PMID: 1356008
  59. PROSITE: a dictionary of sites and patterns in proteins.
    Nucleic Acids Res. 1991 Apr 25;19 Suppl:2241-5 PMID: 2041810
  60. Characterization and mutagenesis of sulfur-regulated genes in a cyanobacterium: evidence for function in sulfate transport.
    J Bacteriol. 1991 May;173(9):2739-50 PMID: 1708375
  61. Molecular genetics and the initiation of solventogenesis in Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052.
    FEMS Microbiol Rev. 1995 Oct;17(3):275-85 PMID: 7576769
  62. A Xanthomonas campestris pv. campestris protein similar to catabolite activation factor is involved in regulation of phytopathogenicity.
    J Bacteriol. 1990 Oct;172(10):5877-83 PMID: 2170330
  63. Lactobacillus casei contains a member of the CRP-FNR family.
    Nucleic Acids Res. 1993 Feb 11;21(3):753 PMID: 8441692
  64. Gas chromatography and gateway sensors for on-line state estimation of complex fermentations (butanol-acetone fermentation).
    Biotechnol Bioeng. 1985 Aug;27(8):1246-57 PMID: 18553808
  65. Subunit composition and domain structure of the Spo0A sporulation transcription factor of Bacillus subtilis.
    J Biol Chem. 1994 Jun 17;269(24):16977-82 PMID: 8207022
  66. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 PMID: 9254694
  67. Catabolite repression in Lactobacillus casei ATCC 393 is mediated by CcpA.
    J Bacteriol. 1997 Nov;179(21):6657-64 PMID: 9352913
  68. A Clostridium acetobutylicum regulator gene (regA) affecting amylase production in Bacillus subtilis.
    Microbiology. 1995 Apr;141 ( Pt 4):989-96 PMID: 7539689
  69. mRNA analysis of the adc gene region of Clostridium acetobutylicum during the shift to solventogenesis.
    J Bacteriol. 1992 Jan;174(2):426-33 PMID: 1370288
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1999-01-00
Pages
319-30
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC103564
Subset
IM
Databases
GENBANK
L14817
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]