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PMID: 3038525 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

DNA recognition by a new family of type I restriction enzymes: a unique relationship between two different DNA specificities.

The EMBO journal ·Vol. 6 ·No. 5 ·1987-05-00 ·Pages 1493-7

Price C, Shepherd JC, Bickle TA

Abstract

The DNA sequences recognized by the allelic type I restriction enzymes EcoR124 and EcoR124/3 were determined. EcoR124 recognizes 5'-GAA(N6)RTCG-3' and EcoR124/3 recognizes 5'-GAA(N7)RTCG-3'. These are typical of sequences recognized by type I recognition enzymes in that they consist of two specific domains separated by a non-specific spacer sequence. For these two enzymes, the specific sequences are identical but the length of the non-specific spacer is different. The specific domains of EcoR124/3 are thus 3.4 A further apart than those of EcoR124 and rotated with respect to each other through a further 36 degrees.

MeSH Terms
Base Sequence DNA DNA Restriction Enzymes/metabolism Deoxyribonucleases, Type I Site-Specific Methylation Plasmids Substrate Specificity
Chemicals
DNA DNA Restriction Enzymes endodeoxyribonuclease EcoR124-3I endodeoxyribonuclease EcoR124I Deoxyribonucleases, Type I Site-Specific
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Price C
Shepherd J C
Bickle T A
References (40)
40 references, click to expand
  1. The nucleotide sequence recognised by the Escherichia coli D type I restriction and modification enzyme.
    Nucleic Acids Res. 1985 Jan 25;13(2):389-99 PMID: 2987794
  2. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  3. A hybrid recognition sequence in a recombinant restriction enzyme and the evolution of DNA sequence specificity.
    Nature. 1985 Jul 25-31;316(6026):371-2 PMID: 2991768
  4. EcoA and EcoE: alternatives to the EcoK family of type I restriction and modification systems of Escherichia coli.
    J Mol Biol. 1985 Nov 5;186(1):65-75 PMID: 3001317
  5. EcoA: the first member of a new family of type I restriction modification systems. Gene organization and enzymatic activities.
    J Mol Biol. 1985 Nov 5;186(1):77-85 PMID: 3001318
  6. The DNA sequence recognized by the EcoDXX1 restriction endonuclease.
    Eur J Biochem. 1986 Jan 15;154(2):295-8 PMID: 3002797
  7. Two DNA recognition domains of the specificity polypeptides of a family of type I restriction enzymes.
    Proc Natl Acad Sci U S A. 1986 Dec;83(24):9368-72 PMID: 3025838
  8. Complete sequence of pSC101.
    Nucleic Acids Res. 1984 Dec 21;12(24):9415-26 PMID: 6096829
  9. Restriction and modification of bacteriophages by R+ strains of Escherichia coli K12.
    Biochem Biophys Res Commun. 1968 Mar 27;30(6):735-8 PMID: 4868172
  10. Supercoiled circular DNA-protein complex in Escherichia coli: purification and induced conversion to an opern circular DNA form.
    Proc Natl Acad Sci U S A. 1969 Apr;62(4):1159-66 PMID: 4894690
  11. Genetics of host-controlled restriction and modification in Escherichia coli.
    Genet Res. 1969 Apr;13(2):227-40 PMID: 4894745
  12. Complementation analysis of temperature-sensitive host specificity mutations in Escherichia coli.
    J Mol Biol. 1970 May 28;50(1):111-27 PMID: 4916553
  13. R124, an fi R factor of a new compatibility class.
    J Gen Microbiol. 1972 Jul;71(2):403-5 PMID: 4558791
  14. Isolation of deoxyribonucleic acid methylase mutants of Escherichia coli K-12.
    J Bacteriol. 1973 Jun;114(3):1143-50 PMID: 4576399
  15. Physical identity of the SV40 deoxyribonucleic acid sequence recognized by the Eco RI restriction endonuclease and modification methylase.
    Biochemistry. 1974 Jan 29;13(3):503-12 PMID: 4358949
  16. DNA restriction and modification systems in Salmonella. SQ, a new system derived by recombination between the SB system of Salmonella typhimurium and the SP system of Salmonella potsdam.
    J Gen Microbiol. 1976 Jul;95(1):166-72 PMID: 784901
  17. Revised interpretation of the origin of the pSC101 plasmid.
    J Bacteriol. 1977 Nov;132(2):734-7 PMID: 334752
  18. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  19. Nucleotide sequence of an insertion element, IS1.
    Proc Natl Acad Sci U S A. 1978 Feb;75(2):615-9 PMID: 273224
  20. Nucleotide sequence of bacteriophage lambda DNA.
    J Mol Biol. 1982 Dec 25;162(4):729-73 PMID: 6221115
  21. Sequence diversity among related genes for recognition of specific targets in DNA molecules.
    J Mol Biol. 1983 May 5;166(1):1-19 PMID: 6304321
  22. The alternate expression of two restriction and modification systems.
    Mol Gen Genet. 1983;190(1):65-9 PMID: 6343803
  23. Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements.
    J Mol Biol. 1983 Jun 5;166(4):477-535 PMID: 6864790
  24. Genetic and physical studies of restriction-deficient mutants of the Inc FIV plasmids R124 and R124/3.
    Mol Gen Genet. 1983;191(1):145-53 PMID: 6577261
  25. Changing the DNA-binding specificity of a repressor.
    Cell. 1983 Dec;35(3 Pt 2):777-83 PMID: 6652685
  26. The nucleotide recognized by the Escherichia coli A restriction and modification enzyme.
    Nucleic Acids Res. 1984 Jan 25;12(2):887-99 PMID: 6320124
  27. The EcoA restriction and modification system of Escherichia coli 15T-: enzyme structure and DNA recognition sequence.
    EMBO J. 1984 Mar;3(3):575-9 PMID: 6325176
  28. Structural homologies among type I restriction-modification systems.
    EMBO J. 1982;1(5):535-9 PMID: 6329689
  29. Mutations that alter the DNA sequence specificity of the catabolite gene activator protein of E. coli.
    Nature. 1984 Sep 20-26;311(5983):232-5 PMID: 6090927
  30. Genetic recombination can generate altered restriction specificity.
    Proc Natl Acad Sci U S A. 1984 Oct;81(19):6095-9 PMID: 6091134
  31. Nucleotide sequence of the recognition site for the restriction-modification enzyme of Escherichia coli B.
    Proc Natl Acad Sci U S A. 1978 May;75(5):2266-70 PMID: 353810
  32. Recognition site of Escherichia coli B restriction enzyme on phi XsB1 and simian virus 40 DNAs: an interrupted sequence.
    Proc Natl Acad Sci U S A. 1978 May;75(5):2271-5 PMID: 209460
  33. Nucleotide sequence of the recognition site of the B-specific restriction modification system in E. coli.
    Mol Gen Genet. 1979 Jan 11;168(3):331-35 PMID: 374993
  34. The nucleotide sequence recognized by the Escherichia coli K12 restriction and modification enzymes.
    J Mol Biol. 1979 May 15;130(2):191-209 PMID: 381674
  35. Complete nucleotide sequence of the Escherichia coli plasmid pBR322.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:77-90 PMID: 383387
  36. Fluorographic detection of radioactivity in polyacrylamide gels with the water-soluble fluor, sodium salicylate.
    Anal Biochem. 1979 Sep 15;98(1):132-5 PMID: 543547
  37. Structure and mechanism of multifunctional restriction endonucleases.
    Annu Rev Biochem. 1981;50:285-319 PMID: 6267988
  38. The nucleotide sequence of IS5 from Escherichia coli.
    Gene. 1981 Aug;14(3):165-74 PMID: 6269959
  39. Nucleotide sequence of the kanamycin resistance transposon Tn903.
    J Mol Biol. 1981 Apr 5;147(2):217-26 PMID: 6270337
  40. Two type I restriction enzymes from Salmonella species. Purification and DNA recognition sequences.
    J Mol Biol. 1985 Apr 20;182(4):579-87 PMID: 2989535
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1987-05-00
Pages
1493-7
Language
English
Region
England
NLM ID
8208664
PMCID
PMC553956
Subset
IM
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