Home LiteratureArticle Details
PMID: 1624445 Published · ppublish English Journal Article Review

Short, interspersed repetitive DNA sequences in prokaryotic genomes.

Journal of bacteriology ·Vol. 174 ·No. 14 ·1992-07-00 ·Pages 4525-9

Lupski JR, Weinstock GM

Abstract

暂无摘要

MeSH Terms
Genome, Bacterial Repetitive Sequences, Nucleic Acid/genetics
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Lupski J R
Institute for Molecular Genetics, Baylor College of Medicine, Houston, Texas 77030.
Weinstock G M
References (70)
70 references, click to expand
  1. Comparison of sequences from the malB regions of Salmonella typhimurium and Enterobacter aerogenes with Escherichia coli K12: a potential new regulatory site in the interoperonic region.
    Mol Gen Genet. 1989 Aug;218(2):199-207 PMID: 2674653
  2. A Candida albicans dispersed, repeated gene family and its epidemiologic applications.
    Proc Natl Acad Sci U S A. 1988 Mar;85(5):1452-6 PMID: 3278313
  3. Repetitive sequence element cloned from Leptospira interrogans serovar hardjo type hardjo-bovis provides a sensitive diagnostic probe for bovine leptospirosis.
    J Clin Microbiol. 1988 Dec;26(12):2495-500 PMID: 3230128
  4. Nucleotide sequence and transcription of the phenylalanine and tyrosine operons of Escherichia coli K12.
    J Mol Biol. 1984 Dec 25;180(4):1023-51 PMID: 6396419
  5. A subfamily of E. coli palindromic units implicated in transcription termination?
    Ann Inst Pasteur Microbiol. 1986 Nov-Dec;137B(3):259-70 PMID: 3318868
  6. Palindromic units from E. coli as binding sites for a chromoid-associated protein.
    FEBS Lett. 1986 Oct 6;206(2):323-8 PMID: 3530812
  7. The BIME family of bacterial highly repetitive sequences.
    Res Microbiol. 1991 Feb-Apr;142(2-3):217-22 PMID: 1656494
  8. Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12.
    J Bacteriol. 1991 Apr;173(8):2665-72 PMID: 1840580
  9. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes.
    Nucleic Acids Res. 1991 Dec 25;19(24):6823-31 PMID: 1762913
  10. Detection of variable DNA repeats in diverse eukaryotic microorganisms by a single set of polymerase chain reaction primers.
    J Clin Microbiol. 1991 Dec;29(12):2746-51 PMID: 1757544
  11. Genomic fingerprinting using arbitrarily primed PCR and a matrix of pairwise combinations of primers.
    Nucleic Acids Res. 1991 Oct 11;19(19):5275-9 PMID: 1923811
  12. A unique repetitive DNA sequence in the Myxococcus xanthus genome.
    J Bacteriol. 1991 Mar;173(6):2125-7 PMID: 1900509
  13. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats.
    Am J Hum Genet. 1991 Oct;49(4):746-56 PMID: 1897522
  14. Rapid identification of specific genes in E. coli by hybridization to membranes containing the ordered set of phage clones.
    Biotechniques. 1991 Apr;10(4):474, 476-7 PMID: 1867855
  15. Palindromic units are part of a new bacterial interspersed mosaic element (BIME).
    Nucleic Acids Res. 1991 Apr 11;19(7):1375-83 PMID: 2027745
  16. DNA polymerase I and a protein complex bind specifically to E. coli palindromic unit highly repetitive DNA: implications for bacterial chromosome organization.
    Nucleic Acids Res. 1990 Jul 11;18(13):3941-52 PMID: 2197600
  17. Telomeres: structure and synthesis.
    J Biol Chem. 1990 Apr 15;265(11):5919-21 PMID: 2180936
  18. Tandem chromosomal duplications: role of REP sequences in the recombination event at the join-point.
    EMBO J. 1990 Mar;9(3):939-46 PMID: 2178927
  19. The Alu family of dispersed repetitive sequences.
    Science. 1982 Jun 4;216(4550):1065-70 PMID: 6281889
  20. A novel intercistronic regulatory element of prokaryotic operons.
    Nature. 1982 Aug 19;298(5876):760-2 PMID: 7110312
  21. A repetitive DNA sequence, rhs, responsible for duplications within the Escherichia coli K-12 chromosome.
    J Mol Biol. 1984 Jul 25;177(1):1-18 PMID: 6086936
  22. Ubiquitous, interspersed repeated sequences in mammalian genomes.
    Proc Natl Acad Sci U S A. 1980 Mar;77(3):1398-402 PMID: 6246492
  23. A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli.
    EMBO J. 1984 Jun;3(6):1417-21 PMID: 6378622
  24. Repetitive extragenic palindromic sequences: a major component of the bacterial genome.
    Cell. 1984 Jul;37(3):1015-26 PMID: 6378385
  25. Unusual physical organization of the Halobacterium genome.
    Nature. 1982 Feb 4;295(5848):384-9 PMID: 7057904
  26. Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.
    Science. 1968 Aug 9;161(3841):529-40 PMID: 4874239
  27. Mapping sequenced E.coli genes by computer: software, strategies and examples.
    Nucleic Acids Res. 1991 Feb 11;19(3):637-47 PMID: 2011534
  28. Isolation of region-specific and polymorphic markers from chromosome 17 by restricted Alu polymerase chain reaction.
    Genomics. 1991 Jan;9(1):31-6 PMID: 2004767
  29. Analysis of three different repeated DNA elements present in the P1 operon of Mycoplasma pneumoniae: size, number and distribution on the genome.
    Nucleic Acids Res. 1990 Nov 11;18(21):6311-7 PMID: 2123027
  30. Palindromic unit highly repetitive DNA sequences exhibit species specificity within Enterobacteriaceae.
    Res Microbiol. 1990 Nov-Dec;141(9):1103-16 PMID: 2092362
  31. Fingerprinting genomes using PCR with arbitrary primers.
    Nucleic Acids Res. 1990 Dec 25;18(24):7213-8 PMID: 2259619
  32. Polymorphism in Brucella spp. due to highly repeated DNA.
    J Bacteriol. 1990 Dec;172(12):6637-40 PMID: 2254243
  33. A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes.
    Nucleic Acids Res. 1990 Nov 25;18(22):6503-8 PMID: 2251112
  34. Analysis of a repetitive DNA sequence from Bordetella pertussis and its application to the diagnosis of pertussis using the polymerase chain reaction.
    J Clin Microbiol. 1990 Sep;28(9):1982-7 PMID: 2229381
  35. Functional role of a highly repetitive DNA sequence in anchorage of the mouse genome.
    Nucleic Acids Res. 1988 Sep 12;16(17):8351-60 PMID: 3419921
  36. Variable number of tandem repeat (VNTR) markers for human gene mapping.
    Science. 1987 Mar 27;235(4796):1616-22 PMID: 3029872
  37. Alu polymerase chain reaction: a method for rapid isolation of human-specific sequences from complex DNA sources.
    Proc Natl Acad Sci U S A. 1989 Sep;86(17):6686-90 PMID: 2771952
  38. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene.
    Am J Hum Genet. 1989 Mar;44(3):397-401 PMID: 2563634
  39. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction.
    Am J Hum Genet. 1989 Mar;44(3):388-96 PMID: 2916582
  40. Regions of Mycoplasma pneumoniae cytadhesin P1 structural gene exist as multiple copies.
    Infect Immun. 1988 Dec;56(12):3157-61 PMID: 3141282
  41. Recombination between repeated genes in microorganisms.
    Annu Rev Genet. 1988;22:147-68 PMID: 3071247
  42. rhs gene family of Escherichia coli K-12.
    J Bacteriol. 1989 Feb;171(2):636-42 PMID: 2644231
  43. The repertoire of silent pilus genes in Neisseria gonorrhoeae: evidence for gene conversion.
    Cell. 1986 Jan 17;44(1):107-15 PMID: 2866848
  44. DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences.
    Proc Natl Acad Sci U S A. 1988 Dec;85(23):8850-4 PMID: 2848243
  45. The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library.
    Cell. 1987 Jul 31;50(3):495-508 PMID: 3038334
  46. Short, interspersed, and repetitive DNA sequences in Spiroplasma species.
    Plasmid. 1987 Mar;17(2):110-6 PMID: 3039555
  47. Role of the intercistronic region in post-transcriptional control of gene expression in the histidine transport operon of Salmonella typhimurium: involvement of REP sequences.
    Mol Microbiol. 1988 Jan;2(1):141-52 PMID: 3130541
  48. Repetitive DNA sequences in Mycoplasma pneumoniae.
    Nucleic Acids Res. 1988 Sep 12;16(17):8337-50 PMID: 3138660
  49. A 26-base-pair repetitive sequence specific for Neisseria gonorrhoeae and Neisseria meningitidis genomic DNA.
    J Bacteriol. 1986 Sep;167(3):1009-15 PMID: 3091577
  50. Repetitive extragenic palindromic sequences, mRNA stability and gene expression: evolution by gene conversion? A review.
    Gene. 1988 Dec 10;72(1-2):3-14 PMID: 3072249
  51. Differential mRNA stability controls relative gene expression within a polycistronic operon.
    Cell. 1987 Dec 24;51(6):1131-43 PMID: 2446776
  52. Bacterial evolution.
    Microbiol Rev. 1987 Jun;51(2):221-71 PMID: 2439888
  53. Reiterated DNA sequences in Rhizobium and Agrobacterium spp.
    J Bacteriol. 1987 Dec;169(12):5782-8 PMID: 3450286
  54. Analysis of inverted repeat DNA in the genome of Rhodomicrobium vannielii.
    J Gen Microbiol. 1986 Feb;132(2):325-30 PMID: 3711860
  55. Hypervariable 'minisatellite' regions in human DNA.
    Nature. 1985 Mar 7-13;314(6006):67-73 PMID: 3856104
  56. Highly repetitive DNA sequences in cyanobacterial genomes.
    J Bacteriol. 1990 May;172(5):2755-61 PMID: 2110150
  57. Prevalence of novel repeat sequences in and around the P1 operon in the genome of Mycoplasma pneumoniae.
    Gene. 1990 Mar 1;87(1):91-6 PMID: 2110102
  58. Polymerase chain reaction amplification of a repetitive DNA sequence specific for Mycobacterium tuberculosis.
    J Infect Dis. 1990 May;161(5):977-81 PMID: 2109022
  59. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria.
    Appl Environ Microbiol. 1992 Jul;58(7):2180-7 PMID: 1637156
  60. Isolation of a marker linked to the Charcot-Marie-Tooth disease type IA gene by differential Alu-PCR of human chromosome 17-retaining hybrids.
    Am J Hum Genet. 1990 Dec;47(6):926-34 PMID: 1978559
  61. Rapid mapping of Escherichia coli::Tn5 insertion mutations by REP-Tn5 PCR.
    PCR Methods Appl. 1992 Feb;1(3):187-92 PMID: 1335324
  62. The RhsD-E subfamily of Escherichia coli K-12.
    Nucleic Acids Res. 1991 Dec;19(25):7177-83 PMID: 1766878
  63. Physical mapping of repetitive extragenic palindromic sequences in Escherichia coli and phylogenetic distribution among Escherichia coli strains and other enteric bacteria.
    J Bacteriol. 1992 Jul;174(14):4583-93 PMID: 1624447
  64. Molecular cloning of a highly repeated DNA element from Mycobacterium tuberculosis and its use as an epidemiological tool.
    J Clin Microbiol. 1992 Apr;30(4):942-6 PMID: 1572981
  65. Dispersed repetitive elements in mouse genome analysis.
    Mamm Genome. 1992;2(4):207-14 PMID: 1543914
  66. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria.
    Mol Microbiol. 1991 Apr;5(4):825-34 PMID: 1713281
  67. A highly conserved repeated chromosomal sequence in the radioresistant bacterium Deinococcus radiodurans SARK.
    J Bacteriol. 1991 Mar;173(6):2137-40 PMID: 1705931
  68. Repeated DNA in Pneumocystis carinii.
    J Clin Microbiol. 1991 Jun;29(6):1194-201 PMID: 1677941
  69. Stabilization of translationally active mRNA by prokaryotic REP sequences.
    Cell. 1987 Jan 30;48(2):297-310 PMID: 2433046
  70. Structure and function of telomeres.
    Annu Rev Genet. 1989;23:579-604 PMID: 2694944
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
DOI
10.1128/jb.174.14.4525-4529.1992
Published
1992-07-00
Pages
4525-9
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC206247
Subset
IM
External Links
PubMed source DOI: 10.1128/jb.174.14.4525-4529.1992 PMC Full Text View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2