Home LiteratureArticle Details
PMID: 6810064 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Translational attenuation of ermC: a deletion analysis.

Molecular & general genetics : MGG ·Vol. 186 ·No. 2 ·1982-00-00 ·Pages 204-16

Hahn J, Grandi G, Gryczan TJ, Dubnau D

Abstract

ermC is a plasmid gene which specifies resistance to macrolide-lincosamide-streptogramin B antibiotics. The product of ermC was previously shown to be an inducible rRNA methylase, which is regulated translationally, and a mechanism for this regulation, termed the translational attenuation model, has been proposed. This model postulates that alternative inactive and active conformational states of the ermC mRNA are modulated by erythromycin-induced ribosome-stalling during translation of a leader peptide. In the present study the translational attenuation model was tested by constructing a series of deletants missing the ermC promoter and portions of the regulatory (leading) region. In these mutants, ermC transcription is dependent on fusion to an upstream promoter. Depending on the terminus of each deletion within the regulatory region, determined by DNA sequencing, ermC expression is observed to be either high level and inducible (like the wild-type), high level and noninducible, or low level and noninducible. The translational attenuation model predicts that as the deletions extend deeper into the leader region, successively masking and unmasking sequences required for translation of the methylase, an alternation of high and low level methylase expression will be observed. These predictions are confirmed. Based on this and other information, the model is refined and extended, and both direct translational activation and kinetic trapping of a metastable active intermediate during transcription are proposed to explain basal synthesis of methylase and to rationalize the effects of certain regulatory mutants.

MeSH Terms
Bacillus subtilis/genetics Base Sequence Erythromycin/pharmacology Gene Expression Regulation Genes Nucleic Acid Conformation Operon Protein Biosynthesis R Factors RNA, Messenger/genetics Ribosomes/metabolism tRNA Methyltransferases/genetics
Chemicals
RNA, Messenger Erythromycin tRNA Methyltransferases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Hahn J
Grandi G
Gryczan T J
Dubnau D
References (58)
58 references, click to expand
  1. Co-operative non-enzymic base recognition. 3. Kinetics of the helix-coil transition of the oligoribouridylic--oligoriboadenylic acid system and of oligoriboadenylic acid alone at acidic pH.
    J Mol Biol. 1971 Dec 14;62(2):361-81 PMID: 5138337
  2. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
  3. Posttranscriptional regulation of an erythromycin resistance protein specified by plasmic pE194.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):3903-7 PMID: 6159624
  4. Stability of ribonucleic acid double-stranded helices.
    J Mol Biol. 1974 Jul 15;86(4):843-53 PMID: 4427357
  5. Translational regulation: identification of the site on bacteriophage T4 rIIB mRNA recognized by the regA gene function.
    Proc Natl Acad Sci U S A. 1981 Aug;78(8):4669-73 PMID: 7029523
  6. A film detection method for tritium-labelled proteins and nucleic acids in polyacrylamide gels.
    Eur J Biochem. 1974 Jul 1;46(1):83-8 PMID: 4850204
  7. Control of gene function in bacteriophage T4. IV. Post-transcriptional shutoff of expression of early genes.
    J Virol. 1973 Sep;12(3):538-47 PMID: 4583805
  8. Characterization of a plasmid-specified ribosome methylase associated with macrolide resistance.
    Nucleic Acids Res. 1981 Jun 11;9(11):2549-62 PMID: 6792593
  9. The control region for erythromycin resistance: free energy changes related to induction and mutation to constitutive expression.
    Mol Gen Genet. 1981;182(2):341-8 PMID: 6169977
  10. General method for the isolation of plasmid deoxyribonucleic acid.
    J Bacteriol. 1973 Nov;116(2):1064-6 PMID: 4583233
  11. Peptidyl puromycin synthesis; effect of several antibiotics which act on 50 S ribosomal subunits.
    FEBS Lett. 1971 Feb 12;13(1):65-67 PMID: 11945634
  12. Post-transcriptional regulatory mutants in a ribosomal protein-RNA polymerase operon of E. coli.
    Cell. 1980 Apr;19(4):837-44 PMID: 6991124
  13. The effect of antibiotics on the coded binding of peptidyl-tRNA to the ribosome and on the transfer of the peptidyl residue to puromycin.
    Eur J Biochem. 1969 May 1;9(1):27-35 PMID: 4891613
  14. Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein.
    Nature. 1972 May 12;237(5350):82-8 PMID: 4555447
  15. Studies on transfer ribonucleic acid-ribosome complexes. XIX. Effect of antibiotics on peptidyl puromycin synthesis on polyribosoms from Escherichia coli.
    J Biol Chem. 1972 Jul 25;247(14):4669-78 PMID: 4557851
  16. Autogenous and post-transcriptional regulation of Escherichia coli RNA polymerase synthesis in vitro.
    Mol Gen Genet. 1980;179(3):489-96 PMID: 6160369
  17. Characterization of plasmid transformation in Bacillus subtilis: kinetic properties and the effect of DNA conformation.
    Mol Gen Genet. 1979 Jan 2;167(3):251-8 PMID: 105246
  18. Erythromycin, a peptidyltransferase effector.
    Biochemistry. 1972 Dec 5;11(25):4864-72 PMID: 4570249
  19. Posttranscriptional modification of mRNA conformation: mechanism that regulates erythromycin-induced resistance.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7079-83 PMID: 6938954
  20. Differential effects of antibiotics on peptidyl transferase reactions.
    Biochem Biophys Res Commun. 1972 Jun 9;47(5):1196-202 PMID: 4555251
  21. Three distinct plasmids originating in the same Staphylococcus aureus strain.
    Arch Roum Pathol Exp Microbiol. 1976 Jan-Jun;35(1-2):111-8 PMID: 1008685
  22. DNA sequence from the histidine operon control region: seven histidine codons in a row.
    Proc Natl Acad Sci U S A. 1978 Sep;75(9):4281-5 PMID: 360216
  23. Plasmid copy number control: isolation and characterization of high-copy-number mutants of plasmid pE194.
    J Bacteriol. 1979 Jan;137(1):635-43 PMID: 104975
  24. Selective action of erythromycin on initiating ribosomes.
    Biochemistry. 1974 Oct 22;13(22):4653-9 PMID: 4609461
  25. Nucleotide sequence of the attenuator region of the histidine operon of Escherichia coli K-12.
    Proc Natl Acad Sci U S A. 1978 Sep;75(9):4276-80 PMID: 360215
  26. The analysis of nucleic acids in gels using glyoxal and acridine orange.
    Methods Enzymol. 1980;65(1):380-91 PMID: 6154866
  27. Replication and expression of plasmids from Staphylococcus aureus in Bacillus subtilis.
    Proc Natl Acad Sci U S A. 1977 Apr;74(4):1680-2 PMID: 404641
  28. Studies on the synthesis of plasmid-coded proteins and their control in Bacillus subtilis minicells.
    Plasmid. 1979 Apr;2(2):279-89 PMID: 109873
  29. The use of thin acrylamide gels for DNA sequencing.
    FEBS Lett. 1978 Mar 1;87(1):107-10 PMID: 631324
  30. Mutation to overproduction of bacteriophage T4 gene products.
    J Virol. 1974 Feb;13(2):428-38 PMID: 4589857
  31. Improved estimation of secondary structure in ribonucleic acids.
    Nat New Biol. 1973 Nov 14;246(150):40-1 PMID: 4519026
  32. Characterization of Staphylococcus aureus plasmids introduced by transformation into Bacillus subtilis.
    J Bacteriol. 1978 Apr;134(1):318-29 PMID: 418061
  33. Regulation of the threonine operon: tandem threonine and isoleucine codons in the control region and translational control of transcription termination.
    Proc Natl Acad Sci U S A. 1979 Apr;76(4):1706-10 PMID: 287010
  34. leu operon of Salmonella typhimurium is controlled by an attenuation mechanism.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):4941-5 PMID: 388423
  35. Construction and properties of chimeric plasmids in Bacillus subtilis.
    Proc Natl Acad Sci U S A. 1978 Mar;75(3):1428-32 PMID: 418412
  36. Unique features in the ribosome binding site sequence of the gram-positive Staphylococcus aureus beta-lactamase gene.
    J Biol Chem. 1981 Nov 10;256(21):11283-91 PMID: 6793593
  37. Transcriptional and post-transcriptional control of RNA polymerase and ribosomal protein genes cloned on composite ColE1 plasmids in the bacterium Escherichia coli.
    J Biol Chem. 1979 Aug 25;254(16):7540-7 PMID: 381287
  38. Organization of the pE194 genome.
    Mol Gen Genet. 1980;179(2):241-52 PMID: 6258012
  39. Level of specific prereplicative mRNA's during bacteriophage T4 regA-, 43- and T4 43- infection of Escherichia coli B.
    J Virol. 1976 Feb;17 (2):538-49 PMID: 176430
  40. Thermodynamic and kinetic parameters of an oligonucleotide hairpin helix.
    Biophys Chem. 1974 May;1(5):381-6 PMID: 23260427
  41. Translational control of transcription termination at the attenuator of the Escherichia coli tryptophan operon.
    Proc Natl Acad Sci U S A. 1978 Dec;75(12):5988-92 PMID: 366606
  42. RNA chain growth rates in Escherichia coli.
    J Mol Biol. 1969 Jan 14;39(1):1-29 PMID: 4938814
  43. Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5350-4 PMID: 414220
  44. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  45. Nucleotide sequence of the leader region of the phenylalanine operon of Escherichia coli.
    Proc Natl Acad Sci U S A. 1978 Sep;75(9):4271-5 PMID: 360214
  46. Construction of a colicin E1-R factor composite plasmid in vitro: means for amplification of deoxyribonucleic acid.
    J Bacteriol. 1975 Jan;121(1):354-62 PMID: 1090574
  47. Effects of macrolide antibiotics on the ribosomal peptidyl transferase in cell-free systems derived from Escherichia coli B and erythromycin-resistant muytant of Escherichia coli B.
    Biochim Biophys Acta. 1971 Jun 17;240(1):109-21 PMID: 4940152
  48. Minicells of Bacillus subtilis.
    J Bacteriol. 1973 May;114(2):860-73 PMID: 4196259
  49. Effects of macrolides on peptide-bond formation and translocation.
    Biochemistry. 1971 May 25;10(11):2054-61 PMID: 4935106
  50. Conformational alteration of mRNA structure and the posttranscriptional regulation of erythromycin-induced drug resistance.
    Nucleic Acids Res. 1980 Dec 20;8(24):6081-97 PMID: 6162157
  51. Specific binding of a chemically synthesized prokaryotic ribosome recognition site. Prospect for molecular cloning and expression of eukaryotic genes.
    J Biol Chem. 1980 May 10;255(9):3809-12 PMID: 6989827
  52. Growth-rate-dependent regulation of ribosome synthesis in E. coli: expression of the lacZ and galK genes fused to ribosomal promoters.
    Cell. 1981 Sep;25(3):773-82 PMID: 6793240
  53. Fate of transforming deoxyribonucleic acid after uptake by competent Bacillus subtilis: phenotypic characterization of radiation-sensitive recombination-deficient mutants.
    J Bacteriol. 1973 Apr;114(1):273-86 PMID: 4349031
  54. Antibiotics as probes of ribosome structure: binding of chloramphenicol and erythromycin to polyribosomes; effect of other antibiotics.
    Antimicrob Agents Chemother. 1974 Mar;5(3):255-67 PMID: 4599122
  55. Regulation of ribosomal protein synthesis in Escherichia coli by selective mRNA inactivation.
    Proc Natl Acad Sci U S A. 1979 Jul;76(7):3411-5 PMID: 158759
  56. Autogenous translational repression of bacteriophage T4 gene 32 expression in vitro.
    J Mol Biol. 1978 Nov 25;126(1):73-90 PMID: 739544
  57. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  58. Alteration of 23 S ribosomal RNA and erythromycin-induced resistance to lincomycin and spiramycin in Staphylococcus aureus.
    J Mol Biol. 1973 Feb 15;74(1):67-72 PMID: 4731016
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1982-00-00
Pages
204-16
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
Grants
NIAID NIH HHS · AI-10311 · United States
NIAID NIH HHS · AI-17472 · United States
Databases
GENBANK
J01755, J01756, J01757, J01758
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]