Home LiteratureArticle Details
PMID: 8336674 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Review

Biology of DNA restriction.

Microbiological reviews ·Vol. 57 ·No. 2 ·1993-06-00 ·Pages 434-50

Bickle TA, Krüger DH

Abstract

Our understanding of the evolution of DNA restriction and modification systems, the control of the expression of the structural genes for the enzymes, and the importance of DNA restriction in the cellular economy has advanced by leaps and bounds in recent years. This review documents these advances for the three major classes of classical restriction and modification systems, describes the discovery of a new class of restriction systems that specifically cut DNA carrying the modification signature of foreign cells, and deals with the mechanisms developed by phages to avoid the restriction systems of their hosts.

MeSH Terms
Bacteria/enzymology Bacteriophages/genetics Base Sequence Binding Sites DNA Restriction-Modification Enzymes/chemistry,genetics,metabolism DNA, Viral/chemistry,metabolism Gene Expression Regulation, Enzymologic Molecular Sequence Data Structure-Activity Relationship
Chemicals
DNA Restriction-Modification Enzymes DNA, Viral
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Bickle T A
Department of Microbiology, Biozentrum, Basel University, Switzerland.
Krüger D H
References (211)
211 references, click to expand
  1. EcoR124 and EcoR124/3: the first members of a new family of type I restriction and modification systems.
    Eur J Biochem. 1987 Aug 17;167(1):111-5 PMID: 3040396
  2. Host specificity of DNA produced by Escherichia coli, X. In vitro restriction of phage fd replicative form.
    Proc Natl Acad Sci U S A. 1968 Apr;59(4):1300-6 PMID: 4870862
  3. Genetic studies on bacteriophage P1.
    Virology. 1968 Dec;36(4):564-74 PMID: 4881411
  4. A complementation analysis of the restriction and modification of DNA in Escherichia coli.
    J Mol Biol. 1969 May 14;41(3):459-72 PMID: 4896022
  5. DNA modification and restriction.
    Annu Rev Biochem. 1969;38:467-500 PMID: 4897066
  6. The recognition of DNA in bacteria.
    Sci Am. 1970 Jan;222(1):88-92 passim PMID: 4903120
  7. Clear plaque mutants of phage P1.
    Virology. 1970 May;41(1):66-71 PMID: 5444276
  8. Host specificity of DNA produced by Escherichia coli. XII. The two restriction and modification systems of strain 15T-.
    Mol Gen Genet. 1970;108(3):203-17 PMID: 4920152
  9. R124, an fi R factor of a new compatibility class.
    J Gen Microbiol. 1972 Jul;71(2):403-5 PMID: 4558791
  10. DNA restriction and modification mechanisms in bacteria.
    Annu Rev Microbiol. 1971;25:153-76 PMID: 4949033
  11. Restriction and modification of DNA.
    Annu Rev Biochem. 1972;41:447-66 PMID: 4563439
  12. R factor-controlled restriction and modification of deoxyribonucleic acid: restriction mutants.
    J Bacteriol. 1972 Dec;112(3):1275-9 PMID: 4565538
  13. DNA-glucosylation in T-even phage: genetic determination and role in phagehost interaction.
    Annu Rev Genet. 1970;4(0):177-92 PMID: 4950809
  14. Kinetics of methylation of DNA by a restriction endonuclease from Escherichia coli B.
    Proc Natl Acad Sci U S A. 1974 Oct;71(10):3810-3 PMID: 4610561
  15. Avoidance of DNA methylation. A virus-encoded methylase inhibitor and evidence for counterselection of methylase recognition sites in viral genomes.
    Cell Biophys. 1989 Aug-Oct;15(1-2):87-95 PMID: 2476230
  16. The EcoDXX1 restriction and modification system: cloning the genes and homology to type I restriction and modification systems.
    Plasmid. 1989 May;21(3):195-204 PMID: 2550978
  17. Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase.
    Gene. 1989 Aug 15;80(2):193-208 PMID: 2684765
  18. Conservation of organization in the specificity polypeptides of two families of type I restriction enzymes.
    J Mol Biol. 1989 Oct 5;209(3):335-44 PMID: 2585490
  19. Cloning, over-expression and the catalytic properties of the EcoP15 modification methylase from Escherichia coli.
    J Mol Biol. 1989 Oct 20;209(4):599-606 PMID: 2585503
  20. Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements.
    J Mol Biol. 1983 Jun 5;166(4):477-535 PMID: 6864790
  21. Cytosine modification in DNA by BcnI methylase yields N4-methylcytosine.
    FEBS Lett. 1983 Sep 5;161(1):131-4 PMID: 6884523
  22. A nonhereditary, host-induced variation of bacterial viruses.
    J Bacteriol. 1952 Oct;64(4):557-69 PMID: 12999684
  23. Host controlled variation in bacterial viruses.
    J Bacteriol. 1953 Feb;65(2):113-21 PMID: 13034700
  24. Host specificity of DNA produced by Escherichia coli. II. Control over acceptance of DNA from infecting phage lambda.
    J Mol Biol. 1962 Jul;5:37-49 PMID: 13888713
  25. ON THE HOST-CONTROLLED MODIFICATION OF BACTERIOPHAGE LAMBDA.
    Virology. 1963 Sep;21:30-5 PMID: 14062909
  26. HOST SPECIFICITY OF DNA PRODUCED BY ESCHERICHIA COLI V . THE ROLE OF METHIONINE IN THE PRODUCTION OF HOST SPECIFICITY.
    J Mol Biol. 1965 Feb;11:247-56 PMID: 14290343
  27. Host specificity of DNA produced by Escherichia coli. I. Host controlled modification of bacteriophage lambda.
    J Mol Biol. 1962 Jul;5:18-36 PMID: 13862047
  28. Specific mismatch correction in bacteriophage lambda crosses by very short patch repair.
    Mol Gen Genet. 1983;191(1):118-25 PMID: 6225003
  29. Bacteriophage survival: multiple mechanisms for avoiding the deoxyribonucleic acid restriction systems of their hosts.
    Microbiol Rev. 1983 Sep;47(3):345-60 PMID: 6314109
  30. [DNA methylation in T3 and T7 phages by DNA-adenine methylases of various types and methylase EcoK ocR+ by protein].
    Dokl Akad Nauk SSSR. 1983 Nov-Dec;273(1):234-7 PMID: 6581040
  31. The nucleotide recognized by the Escherichia coli A restriction and modification enzyme.
    Nucleic Acids Res. 1984 Jan 25;12(2):887-99 PMID: 6320124
  32. Bacterial DNA modification.
    Curr Top Microbiol Immunol. 1984;108:1-9 PMID: 6325094
  33. The EcoA restriction and modification system of Escherichia coli 15T-: enzyme structure and DNA recognition sequence.
    EMBO J. 1984 Mar;3(3):575-9 PMID: 6325176
  34. Transfer of recombinant plasmids containing the gene for DpnII DNA methylase into strains of Streptococcus pneumoniae that produce DpnI or DpnII restriction endonucleases.
    J Bacteriol. 1984 Jun;158(3):905-9 PMID: 6327647
  35. Structural homologies among type I restriction-modification systems.
    EMBO J. 1982;1(5):535-9 PMID: 6329689
  36. Genetic and physiological studies of an Escherichia coli locus that restricts polynucleotide kinase- and RNA ligase-deficient mutants of bacteriophage T4.
    J Virol. 1984 Aug;51(2):522-9 PMID: 6086961
  37. Genetic recombination can generate altered restriction specificity.
    Proc Natl Acad Sci U S A. 1984 Oct;81(19):6095-9 PMID: 6091134
  38. Excision and reintegration of the Escherichia coli K-12 chromosomal element e14.
    J Bacteriol. 1985 Mar;161(3):1112-7 PMID: 2982786
  39. The nucleotide sequence recognised by the Escherichia coli D type I restriction and modification enzyme.
    Nucleic Acids Res. 1985 Jan 25;13(2):389-99 PMID: 2987794
  40. DNA methylation in thermophilic bacteria: N4-methylcytosine, 5-methylcytosine, and N6-methyladenine.
    Nucleic Acids Res. 1985 Feb 25;13(4):1399-412 PMID: 4000939
  41. Inhibition of the type I restriction-modification enzymes EcoB and EcoK by the gene 0.3 protein of bacteriophage T7.
    J Mol Biol. 1985 Apr 20;182(4):567-78 PMID: 2989534
  42. Two type I restriction enzymes from Salmonella species. Purification and DNA recognition sequences.
    J Mol Biol. 1985 Apr 20;182(4):579-87 PMID: 2989535
  43. Transposon mutagenesis and genetic mapping of the rglA and rglB loci of Escherichia coli.
    Mol Gen Genet. 1985;198(3):390-2 PMID: 2989655
  44. The novel gene(s) ARD of plasmid pKM101: alleviation of EcoK restriction.
    Mol Gen Genet. 1985;198(3):509-13 PMID: 2989658
  45. DNA methylation of bacterial viruses T3 and T7 by different DNA methylases in Escherichia coli K12 cells.
    Eur J Biochem. 1985 Jul 15;150(2):323-30 PMID: 3894024
  46. A hybrid recognition sequence in a recombinant restriction enzyme and the evolution of DNA sequence specificity.
    Nature. 1985 Jul 25-31;316(6026):371-2 PMID: 2991768
  47. Investigation of restriction-modification enzymes from M. varians RFL19 with a new type of specificity toward modification of substrate.
    Nucleic Acids Res. 1985 Aug 26;13(16):5727-46 PMID: 2994011
  48. Selection against dam methylation sites in the genomes of DNA of enterobacteriophages.
    J Mol Evol. 1984-1985;21(4):317-22 PMID: 6443311
  49. The EcoDXX1 restriction and modification system of Escherichia coli ET7. Purification, subunit structure and properties of the restriction endonuclease.
    Eur J Biochem. 1985 Oct 15;152(2):387-93 PMID: 2996888
  50. Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli.
    J Bacteriol. 1985 Nov;164(2):501-9 PMID: 2997113
  51. Nucleotide sequence of the BsuRI restriction-modification system.
    Nucleic Acids Res. 1985 Sep 25;13(18):6403-21 PMID: 2997708
  52. Purification of Mbo II methylase (GAAGmA) from Moraxella bovis: site specific cleavage of DNA at nine and ten base pair sequences.
    Nucleic Acids Res. 1985 Oct 25;13(20):7171-82 PMID: 2997742
  53. EcoA and EcoE: alternatives to the EcoK family of type I restriction and modification systems of Escherichia coli.
    J Mol Biol. 1985 Nov 5;186(1):65-75 PMID: 3001317
  54. HSD restriction-modification proteins partake in latent anticodon nuclease.
    EMBO J. 1992 Aug;11(8):3129-34 PMID: 1639077
  55. Evasion of type I and type II DNA restriction systems by IncI1 plasmid CoIIb-P9 during transfer by bacterial conjugation.
    Mol Microbiol. 1992 Jul;6(14):1933-41 PMID: 1508042
  56. Modified DNA fragments activate NaeI cleavage of refractory DNA sites.
    Nucleic Acids Res. 1992 Oct 11;20(19):5127-30 PMID: 1408827
  57. Regulation of the BamHI restriction-modification system by a small intergenic open reading frame, bamHIC, in both Escherichia coli and Bacillus subtilis.
    J Bacteriol. 1992 Nov;174(22):7194-201 PMID: 1429443
  58. Methylation of DNA in prokaryotes.
    EXS. 1993;64:39-108 PMID: 8380352
  59. Nucleotide sequence of the recognition site of the B-specific restriction modification system in E. coli.
    Mol Gen Genet. 1979 Jan 11;168(3):331-35 PMID: 374993
  60. The nucleotide sequence recognized by the Escherichia coli K12 restriction and modification enzymes.
    J Mol Biol. 1979 May 15;130(2):191-209 PMID: 381674
  61. Deoxyribonucleic acid restriction and modification systems in Salmonella: chromosomally located systems of different serotypes.
    J Bacteriol. 1980 Jan;141(1):275-92 PMID: 6243623
  62. DNA recognition and cleavage by the EcoP15 restriction endonuclease.
    J Mol Biol. 1979 Nov 5;134(3):655-66 PMID: 231671
  63. Structures and mechanisms of DNA restriction and modification enzymes.
    Q Rev Biophys. 1979 Aug;12(3):315-69 PMID: 232555
  64. Mutagenic deamination of cytosine residues in DNA.
    Nature. 1980 Oct 9;287(5782):560-1 PMID: 6999365
  65. The hsd (host specificity) genes of E. coli K 12.
    Mol Gen Genet. 1980;180(1):35-46 PMID: 6255295
  66. EcoA: the first member of a new family of type I restriction modification systems. Gene organization and enzymatic activities.
    J Mol Biol. 1985 Nov 5;186(1):77-85 PMID: 3001318
  67. Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products.
    Nucleic Acids Res. 1985 Dec 9;13(23):8441-61 PMID: 3001639
  68. The DNA sequence recognized by the EcoDXX1 restriction endonuclease.
    Eur J Biochem. 1986 Jan 15;154(2):295-8 PMID: 3002797
  69. DNA methyltransferase genes of Bacillus subtilis phages: comparison of their nucleotide sequences.
    Gene. 1986;42(1):89-96 PMID: 3087819
  70. Genetic basis of the complementary DpnI and DpnII restriction systems of S. pneumoniae: an intercellular cassette mechanism.
    Cell. 1986 Sep 26;46(7):993-1000 PMID: 3019562
  71. Unusual occurrence of EcoP1 and EcoP15 recognition sites and counterselection of type II methylation and restriction sequences in bacteriophage T7 DNA.
    Gene. 1986;45(1):77-86 PMID: 3023202
  72. Modification enhancement by the restriction alleviation protein (Ral) of bacteriophage lambda.
    J Mol Biol. 1986 Jul 5;190(1):11-22 PMID: 3023633
  73. Escherichia coli K-12 restricts DNA containing 5-methylcytosine.
    Proc Natl Acad Sci U S A. 1986 Dec;83(23):9070-4 PMID: 3024165
  74. Two DNA recognition domains of the specificity polypeptides of a family of type I restriction enzymes.
    Proc Natl Acad Sci U S A. 1986 Dec;83(24):9368-72 PMID: 3025838
  75. N4-methylcytosine as a minor base in bacterial DNA.
    J Bacteriol. 1987 Mar;169(3):939-43 PMID: 3029036
  76. Cytosine-specific DNA modification interferes with plasmid establishment in Escherichia coli K12: involvement of rglB.
    Mol Gen Genet. 1986 Dec;205(3):469-75 PMID: 3550384
  77. Organization of multispecific DNA methyltransferases encoded by temperate Bacillus subtilis phages.
    EMBO J. 1987 Apr;6(4):1137-42 PMID: 3109889
  78. Site-specific methylases induce the SOS DNA repair response in Escherichia coli.
    J Bacteriol. 1987 Jul;169(7):3243-50 PMID: 3036779
  79. DNA recognition by a new family of type I restriction enzymes: a unique relationship between two different DNA specificities.
    EMBO J. 1987 May;6(5):1493-7 PMID: 3038525
  80. DNA mismatch-repair in Escherichia coli counteracting the hydrolytic deamination of 5-methyl-cytosine residues.
    EMBO J. 1987 Jun;6(6):1809-15 PMID: 3038536
  81. The GATATC-modification enzyme EcoRV is closely related to the GATC-recognizing methyltransferases DpnII and dam from E. coli and phage T4.
    FEBS Lett. 1987 Aug 10;220(1):167-76 PMID: 3609310
  82. Interaction of AluI, Cfr6I and PvuII restriction-modification enzymes with substrates containing either N4-methylcytosine or 5-methylcytosine.
    Biochim Biophys Acta. 1987 Aug 25;909(3):201-7 PMID: 3040102
  83. A specific mismatch repair event protects mammalian cells from loss of 5-methylcytosine.
    Cell. 1987 Sep 11;50(6):945-50 PMID: 3040266
  84. Nucleotide sequence of the recognition site for the restriction-modification enzyme of Escherichia coli B.
    Proc Natl Acad Sci U S A. 1978 May;75(5):2266-70 PMID: 353810
  85. Recognition site of Escherichia coli B restriction enzyme on phi XsB1 and simian virus 40 DNAs: an interrupted sequence.
    Proc Natl Acad Sci U S A. 1978 May;75(5):2271-5 PMID: 209460
  86. Molecular basis of base substitution hotspots in Escherichia coli.
    Nature. 1978 Aug 24;274(5673):775-80 PMID: 355893
  87. Purification and properties of a new restriction endonuclease from Haemophilus influenzae Rf.
    Eur J Biochem. 1978 Dec;92(2):417-26 PMID: 33045
  88. A novel bacteriophage defence mechanism: the anti-restriction protein.
    Nature. 1979 Mar 1;278(5699):30-4 PMID: 763348
  89. Sequence specificity of the P1 modification methylase (M.Eco P1) and the DNA methylase (M.Eco dam) controlled by the Escherichia coli dam gene.
    J Mol Biol. 1978 Dec 15;126(3):367-80 PMID: 370402
  90. Methylation and cleavage sequences of the EcoP1 restriction-modification enzyme.
    J Mol Biol. 1979 Feb 25;128(2):143-63 PMID: 219202
  91. The Pvu II restriction-modification system: cloning, characterization and use in revealing an E. coli barrier to certain methylases or methylated DNAs.
    Gene Amplif Anal. 1987;5:227-45 PMID: 3333367
  92. Oligonucleotide duplexes containing CC(A/T)GG stimulate cleavage of refractory DNA by restriction endonuclease EcoRII.
    FEBS Lett. 1989 Mar 13;245(1-2):141-4 PMID: 2784394
  93. The fokI restriction-modification system. I. Organization and nucleotide sequences of the restriction and modification genes.
    J Biol Chem. 1989 Apr 5;264(10):5751-6 PMID: 2784436
  94. The FokI restriction-modification system. II. Presence of two domains in FokI methylase responsible for modification of different DNA strands.
    J Biol Chem. 1989 Apr 5;264(10):5757-61 PMID: 2647724
  95. Basis for changes in DNA recognition by the EcoR124 and EcoR124/3 type I DNA restriction and modification enzymes.
    J Mol Biol. 1989 Jan 5;205(1):115-25 PMID: 2784505
  96. Alleviation of type I restriction in adenine methylase (dam) mutants of Escherichia coli.
    Mol Gen Genet. 1988 Oct;214(2):313-6 PMID: 2976881
  97. Type II restriction--modification systems.
    Trends Genet. 1988 Nov;4(11):314-8 PMID: 3070854
  98. Nucleotide sequence of the McrB region of Escherichia coli K-12 and evidence for two independent translational initiation sites at the mcrB locus.
    J Bacteriol. 1989 Apr;171(4):1974-81 PMID: 2649480
  99. Characterization of mutations of the bacteriophage P1 mod gene encoding the recognition subunit of the EcoP1 restriction and modification system.
    J Bacteriol. 1989 May;171(5):2347-52 PMID: 2708308
  100. Cytosine-specific type II DNA methyltransferases. A conserved enzyme core with variable target-recognizing domains.
    J Mol Biol. 1989 Mar 20;206(2):305-12 PMID: 2716049
  101. Evolution of type II DNA methyltransferases. A gene duplication model.
    J Mol Biol. 1989 Mar 20;206(2):313-21 PMID: 2541254
  102. In vitro correction of G.T mispairs to G.C pairs in nuclear extracts from human cells.
    Nature. 1989 May 18;339(6221):234-6 PMID: 2716851
  103. Predictive motifs derived from cytosine methyltransferases.
    Nucleic Acids Res. 1989 Apr 11;17(7):2421-35 PMID: 2717398
  104. The DNA and S-adenosylmethionine-binding regions of EcoDam and related methyltransferases.
    Gene. 1988 Dec 25;74(1):211-4 PMID: 3074010
  105. Genetic dissection of the methylcytosine-specific restriction system mcrB of Escherichia coli K-12.
    Gene. 1988 Dec 25;74(1):23-4 PMID: 2854808
  106. The amino acid sequence of the eukaryotic DNA [N6-adenine]methyltransferase, M.CviBIII, has regions of similarity with the prokaryotic isoschizomer M.TaqI and other DNA [N6-adenine] methyltransferases.
    Gene. 1988 Dec 25;74(1):253-9 PMID: 3248728
  107. Organization of target-recognizing domains in the multispecific DNA (cytosine-5)methyltransferases of Bacillus subtilis phages SPR and phi 3T.
    Gene. 1988 Dec 25;74(1):267 PMID: 3150362
  108. Characterization of clones of the BamHI methyltransferase gene.
    Gene. 1988 Dec 25;74(1):35-6 PMID: 3248731
  109. Quantitative evaluation of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants.
    Nucleic Acids Res. 1989 May 11;17(9):3469-78 PMID: 2657660
  110. Sequence, internal homology and high-level expression of the gene for a DNA-(cytosine N4)-methyltransferase, M.Pvu II.
    Nucleic Acids Res. 1989 Jun 12;17(11):4161-75 PMID: 2662138
  111. M.FokI methylates adenine in both strands of its asymmetric recognition sequence.
    Gene. 1989 Apr 15;77(1):1-10 PMID: 2744483
  112. Nucleotide sequence and genetic organization of the NgoPII restriction-modification system of Neisseria gonorrhoeae.
    Mol Gen Genet. 1989 Apr;216(2-3):380-7 PMID: 2501649
  113. Identification of a second polypeptide required for McrB restriction of 5-methylcytosine-containing DNA in Escherichia coli K12.
    Mol Gen Genet. 1989 Apr;216(2-3):402-7 PMID: 2664457
  114. The great GATC: DNA methylation in E. coli.
    Trends Genet. 1989 May;5(5):139-43 PMID: 2667217
  115. Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12.
    Genetics. 1989 Jun;122(2):279-96 PMID: 2548920
  116. DNA methylation and cell memory.
    Cell Biophys. 1989 Aug-Oct;15(1-2):1-13 PMID: 2476217
  117. An improved method for the detection of Dcm methylation in DNA molecules.
    Gene. 1990 Oct 30;95(1):161-2 PMID: 1979301
  118. An anticodon nuclease gene inserted into a hsd region encoding a type I DNA restriction system.
    Nucleic Acids Res. 1990 Dec 11;18(23):7170 PMID: 2263494
  119. Isolation of temperature-sensitive McrA and McrB mutations and complementation analysis of the McrBC region of Escherichia coli K-12.
    J Bacteriol. 1991 Jan;173(1):150-5 PMID: 1987114
  120. Two-step cloning and expression in Escherichia coli of the DNA restriction-modification system StyLTI of Salmonella typhimurium.
    J Bacteriol. 1991 Feb;173(3):1321-7 PMID: 1846861
  121. Transfer of the genes for the StyLTI restriction-modification system of Salmonella typhimurium to strains lacking modification ability results in death of the recipient cells and degradation of their DNA.
    J Bacteriol. 1991 Feb;173(3):1328-30 PMID: 1846862
  122. NaeI endonuclease binding to pBR322 DNA induces looping.
    Biochemistry. 1991 Feb 19;30(7):2006-10 PMID: 1847081
  123. Identification of the recognition sequence for the M.StyLTI methyltransferase of Salmonella typhimurium LT7: an asymmetric site typical of type-III enzymes.
    Gene. 1991 Jan 2;97(1):103-7 PMID: 1995420
  124. A family of regulatory genes associated with type II restriction-modification systems.
    J Bacteriol. 1991 Feb;173(4):1367-75 PMID: 1995588
  125. Ability of DNA and spermidine to affect the activity of restriction endonucleases from several bacterial species.
    Biochemistry. 1991 Mar 5;30(9):2543-9 PMID: 1848100
  126. Characterization of FP22, a large streptomycete bacteriophage with DNA insensitive to cleavage by many restriction enzymes.
    J Gen Microbiol. 1990 Dec;136(12):2395-404 PMID: 1964172
  127. Increased protein flexibility leads to promiscuous protein--DNA interactions in type IC restriction-modification systems.
    EMBO J. 1991 Apr;10(4):951-7 PMID: 1849078
  128. Nomenclature relating to restriction of modified DNA in Escherichia coli.
    J Bacteriol. 1991 Apr;173(8):2707-9 PMID: 2013582
  129. Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts.
    Nucleic Acids Res. 1991 Feb 25;19(4):841-50 PMID: 1901989
  130. Organization of restriction-modification systems.
    Nucleic Acids Res. 1991 May 25;19(10):2539-66 PMID: 2041731
  131. Site-specific methylation: effect on DNA modification methyltransferases and restriction endonucleases.
    Nucleic Acids Res. 1991 Apr 25;19 Suppl:2045-71 PMID: 1645875
  132. Overproduction and purification of McrC protein from Escherichia coli K-12.
    J Bacteriol. 1991 Jun;173(12):3918-20 PMID: 2050643
  133. Class-IIS restriction enzymes--a review.
    Gene. 1991 Apr;100:13-26 PMID: 2055464
  134. M.H2I, a multispecific 5C-DNA methyltransferase encoded by Bacillus amyloliquefaciens phage H2.
    Gene. 1991 Apr;100:213-8 PMID: 2055471
  135. DpnA, a methylase for single-strand DNA in the Dpn II restriction system, and its biological function.
    Proc Natl Acad Sci U S A. 1989 Dec;86(23):9223-7 PMID: 2687877
  136. Cloning, characterization and heterologous expression of the SmaI restriction-modification system.
    Nucleic Acids Res. 1989 Dec 11;17(23):9783-96 PMID: 2690008
  137. Sequence motifs characteristic of DNA[cytosine-N4]methyltransferases: similarity to adenine and cytosine-C5 DNA-methylases.
    Nucleic Acids Res. 1989 Dec 11;17(23):9823-32 PMID: 2690010
  138. DNA and spermidine provide a switch mechanism to regulate the activity of restriction enzyme Nae I.
    Proc Natl Acad Sci U S A. 1989 Dec;86(24):9707-11 PMID: 2602372
  139. Primary sequence of the EcoRII endonuclease and properties of its fusions with beta-galactosidase.
    J Biol Chem. 1990 Jan 15;265(2):767-73 PMID: 2104830
  140. Finding sequence motifs in groups of functionally related proteins.
    Proc Natl Acad Sci U S A. 1990 Jan;87(2):826-30 PMID: 1689055
  141. Comparison of the nucleotide and amino acid sequences of the RsrI and EcoRI restriction endonucleases.
    Gene. 1989 Dec 21;85(1):1-13 PMID: 2695392
  142. The amino acid sequence of the CCGG recognizing DNA methyltransferase M.BsuFI: implications for the analysis of sequence recognition by cytosine DNA methyltransferases.
    EMBO J. 1990 Apr;9(4):1007-13 PMID: 2108858
  143. DNA restriction--modification genes of phage P1 and plasmid p15B. Structure and in vitro transcription.
    J Mol Biol. 1983 Mar 25;165(1):1-18 PMID: 6302279
  144. DNA restriction--modification enzymes of phage P1 and plasmid p15B. Subunit functions and structural homologies.
    J Mol Biol. 1983 Mar 25;165(1):19-34 PMID: 6302281
  145. Restriction and modification in Bacillus subtilis: DNA methylation potential of the related bacteriophages Z, SPR, SP beta, phi 3T, and rho 11.
    J Virol. 1983 May;46(2):446-53 PMID: 6302313
  146. Sequence diversity among related genes for recognition of specific targets in DNA molecules.
    J Mol Biol. 1983 May 5;166(1):1-19 PMID: 6304321
  147. The alternate expression of two restriction and modification systems.
    Mol Gen Genet. 1983;190(1):65-9 PMID: 6343803
  148. Cloning and sequencing of genes encoding the TthHB8I restriction and modification enzymes: comparison with the isoschizomeric TaqI enzymes.
    Gene. 1992 Mar 1;112(1):3-12 PMID: 1339363
  149. Purification and N-terminal amino acid sequences of two polypeptides encoded by the mcrB gene from Escherichia coli K-12.
    Gene. 1992 Mar 1;112(1):97-100 PMID: 1312983
  150. Sequence and characterization of pvuIIR, the PvuII endonuclease gene, and of pvuIIC, its regulatory gene.
    J Bacteriol. 1992 May;174(10):3395-8 PMID: 1577705
  151. Restriction and modification systems.
    Annu Rev Genet. 1991;25:585-627 PMID: 1812816
  152. Characterization of the mcrBC region of Escherichia coli K-12 wild-type and mutant strains.
    Gene. 1992 May 1;114(1):1-12 PMID: 1316864
  153. Organization and function of the mcrBC genes of Escherichia coli K-12.
    Mol Microbiol. 1992 May;6(9):1079-86 PMID: 1316984
  154. McrBC: a multisubunit GTP-dependent restriction endonuclease.
    J Mol Biol. 1992 May 20;225(2):327-48 PMID: 1317461
  155. IncN plasmid pKM101 and IncI1 plasmid ColIb-P9 encode homologous antirestriction proteins in their leading regions.
    J Bacteriol. 1992 Aug;174(15):5079-85 PMID: 1321121
  156. Molecular evolution of bacteriophages: evidence of selection against the recognition sites of host restriction enzymes.
    Mol Biol Evol. 1986 Jan;3(1):75-83 PMID: 2832688
  157. Entry of bacteriophage T7 DNA into the cell and escape from host restriction.
    J Bacteriol. 1988 May;170(5):2095-105 PMID: 2834322
  158. EcoRII can be activated to cleave refractory DNA recognition sites.
    Nucleic Acids Res. 1988 May 11;16(9):3997-4008 PMID: 2836807
  159. Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants.
    J Mol Biol. 1988 Mar 5;200(1):23-9 PMID: 2837577
  160. RglB facilitated cloning of highly methylated eukaryotic DNA: the human L1 transposon, plant DNA, and DNA methylated in vitro with human DNA methyltransferase.
    Nucleic Acids Res. 1988 May 25;16(10):4465-82 PMID: 2837736
  161. Reassortment of DNA recognition domains and the evolution of new specificities.
    Mol Microbiol. 1987 Jul;1(1):13-22 PMID: 2838725
  162. Chimeric multispecific DNA methyltransferases with novel combinations of target recognition.
    Nucleic Acids Res. 1988 Jul 25;16(14A):6649-58 PMID: 3041380
  163. Enhanced recovery and restriction mapping of DNA fragments cloned in a new lambda vector.
    Nucleic Acids Res. 1988 Jul 25;16(14B):6725-36 PMID: 2841642
  164. Sequential order of target-recognizing domains in multispecific DNA-methyltransferases.
    EMBO J. 1988 Aug;7(8):2601-9 PMID: 3142766
  165. Characterization of a unique methyl-specific restriction system in Streptomyces avermitilis.
    J Bacteriol. 1988 Dec;170(12):5607-12 PMID: 3056907
  166. Conservation of complex DNA recognition domains between families of restriction enzymes.
    Cell. 1989 Jan 13;56(1):103-9 PMID: 2642743
  167. Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells. The carboxyl-terminal domain of the mammalian enzymes is related to bacterial restriction methyltransferases.
    J Mol Biol. 1988 Oct 20;203(4):971-83 PMID: 3210246
  168. Spontaneous mutation at a 5-methylcytosine hotspot is prevented by very short patch (VSP) mismatch repair.
    Genetics. 1991 May;128(1):23-7 PMID: 1829427
  169. In vivo genetic exchange of a functional domain from a type II A methylase between lactococcal plasmid pTR2030 and a virulent bacteriophage.
    J Bacteriol. 1991 Jul;173(14):4363-70 PMID: 1906061
  170. Identification and characterization of a gene responsible for inhibiting propagation of methylated DNA sequences in mcrA mcrB1 Escherichia coli strains.
    J Bacteriol. 1991 Aug;173(15):4707-16 PMID: 1649819
  171. The HgaI restriction-modification system contains two cytosine methylase genes responsible for modification of different DNA strands.
    J Biol Chem. 1991 Jul 25;266(21):13952-7 PMID: 1856224
  172. Characterization and expression of the Escherichia coli Mrr restriction system.
    J Bacteriol. 1991 Aug;173(16):5207-19 PMID: 1650347
  173. A novel activity in Escherichia coli K-12 that directs restriction of DNA modified at CG dinucleotides.
    J Bacteriol. 1991 Aug;173(16):5220-3 PMID: 1830580
  174. M.EcoP15 methylates the second adenine in its recognition sequence.
    Nucleic Acids Res. 1991 Jul 25;19(14):3997 PMID: 1861989
  175. 'Pseudo' domains in phage-encoded DNA methyltransferases.
    Nature. 1991 Aug 15;352(6336):645-8 PMID: 1865925
  176. The optional E. coli prr locus encodes a latent form of phage T4-induced anticodon nuclease.
    EMBO J. 1990 May;9(5):1383-9 PMID: 1691706
  177. A gene required for very short patch repair in Escherichia coli is adjacent to the DNA cytosine methylase gene.
    J Bacteriol. 1990 Aug;172(8):4214-21 PMID: 2198248
  178. Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12.
    J Bacteriol. 1990 Sep;172(9):4888-900 PMID: 2203735
  179. Specificity of restriction endonucleases and DNA modification methyltransferases a review (Edition 3).
    Gene. 1990 Aug 16;92(1-2):1-248 PMID: 2172084
  180. A possible role for DNA restriction in bacterial evolution.
    Microbiol Sci. 1986 Oct;3(10):296-9 PMID: 2856420
  181. RleAI: a novel class-IIS restriction endonuclease from Rhizobium leguminosarum recognizing 5'-CCCACA(N)12-3' 3'-GGGTGT(N)9-5'.
    Gene. 1990 Oct 30;95(1):129-31 PMID: 2253885
  182. The ral gene of phage lambda. III. Interference with E. coli ATP dependent functions.
    Mol Gen Genet. 1980;179(1):81-8 PMID: 6256609
  183. 5-Methylcytosine in eukaryotic DNA.
    Science. 1981 Jun 19;212(4501):1350-7 PMID: 6262918
  184. The DNA sequence recognised by the HinfIII restriction endonuclease.
    J Mol Biol. 1981 Feb 15;146(1):167-72 PMID: 6267295
  185. Structure and mechanism of multifunctional restriction endonucleases.
    Annu Rev Biochem. 1981;50:285-319 PMID: 6267988
  186. Heat- and alkali-induced deamination of 5-methylcytosine and cytosine residues in DNA.
    Biochim Biophys Acta. 1982 Jun 30;697(3):371-7 PMID: 7104364
  187. HineI is an isoschizomer of HinfIII restriction endonuclease.
    J Mol Biol. 1982 May 15;157(2):373-81 PMID: 6286981
  188. Host-controlled modification and restriction as a criterion of evaluating the therapeutical potential of Pseudomonas phage.
    J Basic Microbiol. 1991;31(2):101-6 PMID: 1880713
  189. Nucleotide sequence of the gene (ard) encoding the antirestriction protein of plasmid colIb-P9.
    J Bacteriol. 1991 Sep;173(18):5887-92 PMID: 1653225
  190. Mutations that confer de novo activity upon a maintenance methyltransferase.
    J Mol Biol. 1991 Sep 20;221(2):431-40 PMID: 1833555
  191. Activation of restriction endonuclease EcoRII does not depend on the cleavage of stimulator DNA.
    Nucleic Acids Res. 1991 Oct 11;19(19):5139-42 PMID: 1923799
  192. Cloning and structural characterization of the mcrA locus of Escherichia coli.
    J Bacteriol. 1991 Nov;173(22):7368-73 PMID: 1938927
  193. A structural taxonomy of DNA-binding domains.
    Nature. 1991 Oct 24;353(6346):715-9 PMID: 1944532
  194. The vsr gene product of E. coli K-12 is a strand- and sequence-specific DNA mismatch endonuclease.
    Nature. 1991 Oct 24;353(6346):776-8 PMID: 1944537
  195. The sequence specificity domain of cytosine-C5 methylases.
    Nucleic Acids Res. 1991 Nov 25;19(22):6183-90 PMID: 1659688
  196. Cloning, characterization and evolution of the BsuFI restriction endonuclease gene of Bacillus subtilis and purification of the enzyme.
    Nucleic Acids Res. 1991 Dec 11;19(23):6457-63 PMID: 1721700
  197. Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage.
    Nature. 1992 Jan 30;355(6359):467-9 PMID: 1734285
  198. Recombination of constant and variable modules alters DNA sequence recognition by type IC restriction-modification enzymes.
    EMBO J. 1992 Jan;11(1):233-40 PMID: 1740108
  199. Use of specific oligonucleotide duplexes to stimulate cleavage of refractory DNA sites by restriction endonucleases.
    Anal Biochem. 1993 Mar;209(2):232-7 PMID: 8385888
  200. Recombinant derivatives of Bacillus subtilis phage Z containing the DNA methyltransferase genes of related methylation-proficient phages.
    J Gen Microbiol. 1987 Apr;133(4):945-52 PMID: 3116167
  201. Cloning, sequencing and expression of the Taq I restriction-modification system.
    Nucleic Acids Res. 1987 Dec 10;15(23):9781-96 PMID: 2827113
  202. Construction and use of chimeric SPR/phi 3T DNA methyltransferases in the definition of sequence recognizing enzyme regions.
    EMBO J. 1987 Nov;6(11):3543-9 PMID: 2828032
  203. Organization and sequence of the hsd genes of Escherichia coli K-12.
    J Mol Biol. 1987 Nov 20;198(2):159-70 PMID: 3323532
  204. McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning.
    Nucleic Acids Res. 1988 Feb 25;16(4):1563-75 PMID: 2831502
  205. Mechanism and control of homologous recombination in Escherichia coli.
    Annu Rev Genet. 1987;21:179-201 PMID: 3327462
  206. Distribution and diversity of hsd genes in Escherichia coli and other enteric bacteria.
    J Bacteriol. 1988 Apr;170(4):1775-82 PMID: 2832380
  207. Modification-deficient mutants of bacteriophage P1. I. Restriction by P1 cryptic lysogens.
    Virology. 1973 Mar;52(1):213-22 PMID: 4610987
  208. SAMase gene of bacteriophage T3 is responsible for overcoming host restriction.
    J Virol. 1976 Jul;19(1):136-45 PMID: 781304
  209. Biological properties of a Haemophilus influenzae restriction enzyme, Hind I.
    J Bacteriol. 1976 Aug;127(2):848-54 PMID: 1085299
  210. DNA restriction and modification systems in Salmonella. SQ, a new system derived by recombination between the SB system of Salmonella typhimurium and the SP system of Salmonella potsdam.
    J Gen Microbiol. 1976 Jul;95(1):166-72 PMID: 784901
  211. Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation.
    J Mol Biol. 1977 Jul;114(1):153-68 PMID: 20509
Article Info
Journal
Microbiological reviews
Abbr.
Microbiol Rev
ISSN
0146-0749
Published
1993-06-00
Pages
434-50
Language
English
Region
United States
NLM ID
7806086
PMCID
PMC372918
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]